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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CopyNeutralIMA
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* checking for file ‘CopyNeutralIMA/DESCRIPTION’ ... OK
* preparing ‘CopyNeutralIMA’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to process help pages)
Loading required namespace: CopyNeutralIMA
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘CopyNeutralIMA.Rmd’ using rmarkdown

Quitting from CopyNeutralIMA.Rmd:56-66 [read_tcga]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'conumee'
---
Backtrace:
    ▆
 1. └─base::library(conumee)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'CopyNeutralIMA.Rmd' failed with diagnostics:
there is no package called 'conumee'
--- failed re-building ‘CopyNeutralIMA.Rmd’

SUMMARY: processing the following file failed:
  ‘CopyNeutralIMA.Rmd’

Error: Vignette re-building failed.
Execution halted