############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data EpiTxDb.Hs.hg38 ### ############################################################################## ############################################################################## * checking for file ‘EpiTxDb.Hs.hg38/DESCRIPTION’ ... OK * preparing ‘EpiTxDb.Hs.hg38’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘EpiTxDb.Hs.hg38.Rmd’ using rmarkdown Quitting from EpiTxDb.Hs.hg38.Rmd:74-88 [unnamed-chunk-6] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `get_seqtype_conversion_lookup()`: ! Biostrings internal error, please report --- Backtrace: ▆ 1. └─Modstrings::ModRNAStringSet(...) 2. ├─Biostrings:::XStringSet(...) 3. └─Biostrings:::XStringSet(...) 4. └─Biostrings:::.charToXStringSet(...) 5. ├─Biostrings::make_XStringSet_from_strings(...) 6. └─Modstrings (local) make_XStringSet_from_strings(...) 7. ├─methods::callNextMethod() 8. └─Biostrings (local) .nextMethod(x0 = x0, strings = strings, start = start, width = width) 9. └─Biostrings::get_seqtype_conversion_lookup("B", seqtype(x0)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'EpiTxDb.Hs.hg38.Rmd' failed with diagnostics: Biostrings internal error, please report --- failed re-building ‘EpiTxDb.Hs.hg38.Rmd’ SUMMARY: processing the following file failed: ‘EpiTxDb.Hs.hg38.Rmd’ Error: Vignette re-building failed. Execution halted