############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data ggcyto ### ############################################################################## ############################################################################## * checking for file ‘ggcyto/DESCRIPTION’ ... OK * preparing ‘ggcyto’: * checking DESCRIPTION meta-information ... OK * installing the package to process help pages * saving partial Rd database * creating vignettes ... ERROR --- re-building ‘Top_features_of_ggcyto.Rmd’ using rmarkdown Quitting from Top_features_of_ggcyto.Rmd:58-60 [unnamed-chunk-6] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `add_ggcyto()`: ! object '+.gg' not found --- Backtrace: ▆ 1. ├─ggcyto::ggcyto(gs, aes(x = CD4, y = CD8)) 2. └─ggcyto:::ggcyto.GatingSet(gs, aes(x = CD4, y = CD8)) 3. └─ggcyto:::ggcyto.flowSet(data = data, mapping = mapping, ...) 4. ├─p + ggcyto_par_default() 5. └─p + ggcyto_par_default() 6. └─ggcyto:::add_ggcyto(e1, e2, e2name) 7. ├─e1 + e2.new 8. └─e1 + e2.new 9. └─ggcyto:::add_ggcyto(e1, e2, e2name) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Top_features_of_ggcyto.Rmd' failed with diagnostics: object '+.gg' not found --- failed re-building ‘Top_features_of_ggcyto.Rmd’ --- re-building ‘autoplot.Rmd’ using rmarkdown Quitting from autoplot.Rmd:27-29 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `add_ggcyto()`: ! object '+.gg' not found --- Backtrace: ▆ 1. ├─ggplot2::autoplot(fs, x = "FSC-H") 2. └─ggcyto:::autoplot.flowSet(fs, x = "FSC-H") 3. ├─ggcyto::ggcyto(object, aes_q(x = as.symbol(x)), ...) 4. └─ggcyto:::ggcyto.flowSet(object, aes_q(x = as.symbol(x)), ...) 5. ├─p + ggcyto_par_default() 6. └─p + ggcyto_par_default() 7. └─ggcyto:::add_ggcyto(e1, e2, e2name) 8. ├─e1 + e2.new 9. └─e1 + e2.new 10. └─ggcyto:::add_ggcyto(e1, e2, e2name) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'autoplot.Rmd' failed with diagnostics: object '+.gg' not found --- failed re-building ‘autoplot.Rmd’ --- re-building ‘ggcyto.GatingSet.Rmd’ using rmarkdown --- finished re-building ‘ggcyto.GatingSet.Rmd’ --- re-building ‘ggcyto.flowSet.Rmd’ using rmarkdown Quitting from ggcyto.flowSet.Rmd:29-33 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `add_ggcyto()`: ! object '+.gg' not found --- Backtrace: ▆ 1. ├─ggcyto::ggcyto(fs, aes(x = `FSC-H`)) 2. └─ggcyto:::ggcyto.flowSet(fs, aes(x = `FSC-H`)) 3. ├─p + ggcyto_par_default() 4. └─p + ggcyto_par_default() 5. └─ggcyto:::add_ggcyto(e1, e2, e2name) 6. ├─e1 + e2.new 7. └─e1 + e2.new 8. └─ggcyto:::add_ggcyto(e1, e2, e2name) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'ggcyto.flowSet.Rmd' failed with diagnostics: object '+.gg' not found --- failed re-building ‘ggcyto.flowSet.Rmd’ SUMMARY: processing the following files failed: ‘Top_features_of_ggcyto.Rmd’ ‘autoplot.Rmd’ ‘ggcyto.flowSet.Rmd’ Error: Vignette re-building failed. Execution halted