Back to Long Tests report for BioC 3.22

This page was generated on 2025-08-02 23:55 -0400 (Sat, 02 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4796
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4535
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4578
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 5/29HostnameOS / ArchCHECK
biodbChebi 1.15.1  (landing page)
Pierrick Roger
Snapshot Date: 2025-08-02 09:55 -0400 (Sat, 02 Aug 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: devel
git_last_commit: b5e26aa
git_last_commit_date: 2025-06-24 10:11:00 -0400 (Tue, 24 Jun 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK  
palomino8Windows Server 2022 Datacenter / x64  OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK  

CHECK results for biodbChebi on nebbiolo2

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.15.1
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
StartedAt: 2025-08-02 16:01:06 -0400 (Sat, 02 Aug 2025)
EndedAt: 2025-08-02 16:02:39 -0400 (Sat, 02 Aug 2025)
EllapsedTime: 93.0 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


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Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-08-02 16:01:38.242][biodb::testContext]
biodb.INFO [2025-08-02 16:01:38.244][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-02 16:01:38.245][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-08-02 16:01:38.246][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-02 16:01:38.247][biodb::testContext]
biodb.INFO [2025-08-02 16:01:38.254][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.1.
biodb.DEBUG[2025-08-02 16:01:38.256][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-08-02 16:01:38.263][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-02 16:01:38.264][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-02 16:01:38.266][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-02 16:01:38.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.270][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-02 16:01:38.289][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-02 16:01:38.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.294][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-02 16:01:38.295][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-02 16:01:38.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.298][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-02 16:01:38.300][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-02 16:01:38.301][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-02 16:01:38.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.305][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-02 16:01:38.306][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-02 16:01:38.307][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-02 16:01:38.308][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.311][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-02 16:01:38.312][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-02 16:01:38.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.324][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-02 16:01:38.325][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-02 16:01:38.326][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-02 16:01:38.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.329][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-02 16:01:38.330][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-02 16:01:38.331][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.333][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-02 16:01:38.334][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-02 16:01:38.335][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-02 16:01:38.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.338][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-02 16:01:38.339][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-02 16:01:38.340][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-02 16:01:38.341][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-02 16:01:38.342][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-02 16:01:38.343][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-02 16:01:38.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.346][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-02 16:01:38.347][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-02 16:01:38.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.350][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-02 16:01:38.351][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-02 16:01:38.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.354][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-02 16:01:38.355][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-02 16:01:38.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.359][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-02 16:01:38.360][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-02 16:01:38.361][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-02 16:01:38.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.364][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-02 16:01:38.365][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-02 16:01:38.369][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-02 16:01:38.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.373][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-02 16:01:38.374][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-02 16:01:38.375][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-02 16:01:38.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.380][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-02 16:01:38.411][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-02 16:01:38.425][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-02 16:01:38.426][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.427][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-02 16:01:38.428][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.429][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-02 16:01:38.430][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-02 16:01:38.431][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-02 16:01:38.432][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-02 16:01:38.433][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-02 16:01:38.433][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.434][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-02 16:01:38.435][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-02 16:01:38.436][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-02 16:01:38.437][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.438][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-02 16:01:38.438][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-02 16:01:38.438][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-02 16:01:38.438][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-02 16:01:38.438][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-02 16:01:38.439][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-02 16:01:38.440][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-02 16:01:38.441][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-02 16:01:38.442][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-02 16:01:38.442][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-02 16:01:38.443][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-02 16:01:38.444][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-02 16:01:38.445][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-02 16:01:38.446][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-02 16:01:38.447][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-02 16:01:38.448][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-02 16:01:38.449][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-02 16:01:38.450][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-02 16:01:38.451][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-02 16:01:38.452][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-02 16:01:38.453][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.454][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-02 16:01:38.455][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.456][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-02 16:01:38.457][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-02 16:01:38.458][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-02 16:01:38.459][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-02 16:01:38.460][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-02 16:01:38.460][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.461][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-02 16:01:38.462][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-02 16:01:38.463][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-02 16:01:38.464][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.465][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-02 16:01:38.465][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-02 16:01:38.465][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-02 16:01:38.465][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-02 16:01:38.465][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-02 16:01:38.466][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-02 16:01:38.467][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-02 16:01:38.468][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-02 16:01:38.469][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-02 16:01:38.469][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-02 16:01:38.470][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-02 16:01:38.471][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-02 16:01:38.472][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-02 16:01:38.473][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-02 16:01:38.474][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-02 16:01:38.475][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-02 16:01:38.476][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-02 16:01:38.477][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-02 16:01:38.478][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.479][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-02 16:01:38.480][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.481][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-02 16:01:38.482][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.483][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-02 16:01:38.484][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-02 16:01:38.485][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-02 16:01:38.486][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-02 16:01:38.486][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-02 16:01:38.487][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-02 16:01:38.488][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-02 16:01:38.489][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-02 16:01:38.490][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-02 16:01:38.491][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.492][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-02 16:01:38.493][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-02 16:01:38.494][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-02 16:01:38.495][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-02 16:01:38.495][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-02 16:01:38.496][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-02 16:01:38.497][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-02 16:01:38.498][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-02 16:01:38.499][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-02 16:01:38.500][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-02 16:01:38.501][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-02 16:01:38.501][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-02 16:01:38.502][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-02 16:01:38.503][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-02 16:01:38.505][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.506][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-02 16:01:38.507][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.508][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-02 16:01:38.509][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.510][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-02 16:01:38.511][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-02 16:01:38.511][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-02 16:01:38.512][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-02 16:01:38.513][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-02 16:01:38.514][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-02 16:01:38.515][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-02 16:01:38.516][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-02 16:01:38.517][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-02 16:01:38.518][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.523][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-02 16:01:38.524][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-02 16:01:38.525][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-02 16:01:38.526][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-02 16:01:38.527][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-02 16:01:38.528][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-02 16:01:38.528][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-02 16:01:38.529][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-02 16:01:38.530][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-02 16:01:38.531][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-02 16:01:38.532][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-02 16:01:38.533][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-02 16:01:38.534][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-02 16:01:38.537][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-02 16:01:38.538][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.589][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.605][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-02 16:01:38.609][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-02 16:01:38.611][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-02 16:01:38.612][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-02 16:01:38.613][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-02 16:01:38.615][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-02 16:01:38.616][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-02 16:01:38.617][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-02 16:01:38.618][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-02 16:01:38.620][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-02 16:01:38.621][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-02 16:01:38.622][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-02 16:01:38.624][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-02 16:01:38.625][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-02 16:01:38.626][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-02 16:01:38.627][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-02 16:01:38.629][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-02 16:01:38.630][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-02 16:01:38.631][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-02 16:01:38.632][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-02 16:01:38.634][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-02 16:01:38.635][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-02 16:01:38.636][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-02 16:01:38.638][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-02 16:01:38.639][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-02 16:01:38.640][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-02 16:01:38.641][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-02 16:01:38.643][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-02 16:01:38.644][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-02 16:01:38.645][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-02 16:01:38.647][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-02 16:01:38.648][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-02 16:01:38.649][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-02 16:01:38.650][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-02 16:01:38.652][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-02 16:01:38.653][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-02 16:01:38.654][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-02 16:01:38.655][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-02 16:01:38.657][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-02 16:01:38.658][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-02 16:01:38.659][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-02 16:01:38.661][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-02 16:01:38.662][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-02 16:01:38.663][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-02 16:01:38.664][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-02 16:01:38.666][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-02 16:01:38.667][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-02 16:01:38.668][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-02 16:01:38.670][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-02 16:01:38.671][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-02 16:01:38.672][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-02 16:01:38.673][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-02 16:01:38.675][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-02 16:01:38.676][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-02 16:01:38.677][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-02 16:01:38.679][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-02 16:01:38.680][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-02 16:01:38.681][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-02 16:01:38.682][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-02 16:01:38.684][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-02 16:01:38.685][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-02 16:01:38.686][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-02 16:01:38.688][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-02 16:01:38.689][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-02 16:01:38.690][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-02 16:01:38.691][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-02 16:01:38.693][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-02 16:01:38.694][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-02 16:01:38.695][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-02 16:01:38.696][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-02 16:01:38.698][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-02 16:01:38.699][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-02 16:01:38.700][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-02 16:01:38.702][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-02 16:01:38.703][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-02 16:01:38.704][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-02 16:01:38.705][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-02 16:01:38.707][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-02 16:01:38.708][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-02 16:01:38.709][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-02 16:01:38.711][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-02 16:01:38.712][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-02 16:01:38.713][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-02 16:01:38.723][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-02 16:01:38.725][initialize] This is biodb version 1.17.1.
biodb.DEBUG[2025-08-02 16:01:38.728][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-02 16:01:38.728][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.730][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:38.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:38.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:38.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:38.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:38.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:38.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:38.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:38.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:38.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:38.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:38.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:38.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:38.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:38.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:38.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:38.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:38.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:38.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.787][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:38.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:38.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:38.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:38.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:38.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:38.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:38.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:38.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:38.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:38.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:38.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:38.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-02 16:01:38.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:38.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:38.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:38.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:38.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:38.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:38.842][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-08-02 16:01:38.854][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-08-02 16:01:38.857][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-02 16:01:38.858][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-02 16:01:38.859][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.860][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-02 16:01:38.861][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.862][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-02 16:01:38.863][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.864][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-08-02 16:01:38.865][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-02 16:01:38.866][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-02 16:01:38.867][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.868][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-08-02 16:01:38.869][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-02 16:01:38.870][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-08-02 16:01:38.870][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-08-02 16:01:38.870][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-08-02 16:01:38.870][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-08-02 16:01:38.870][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-08-02 16:01:38.870][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-08-02 16:01:38.870][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-08-02 16:01:38.870][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-08-02 16:01:38.870][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-08-02 16:01:38.870][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-08-02 16:01:38.870][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-08-02 16:01:38.871][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-02 16:01:38.872][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-02 16:01:38.872][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-02 16:01:38.872][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-02 16:01:38.873][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-02 16:01:38.875][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-02 16:01:38.875][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-02 16:01:38.876][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-02 16:01:38.877][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-02 16:01:38.878][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-02 16:01:38.879][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-02 16:01:38.880][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-02 16:01:38.880][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-08-02 16:01:38.881][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-02 16:01:38.882][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-02 16:01:38.883][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-02 16:01:38.884][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-08-02 16:01:38.884][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-08-02 16:01:38.891][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-02 16:01:38.893][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-02 16:01:38.894][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-08-02 16:01:38.896][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-02 16:01:38.897][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-02 16:01:38.899][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-02 16:01:38.930][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-08-02 16:01:38.949][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-08-02 16:01:38.958][biodb::testThat]
biodb.INFO [2025-08-02 16:01:38.959][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-08-02 16:01:38.960][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-02 16:01:38.961][biodb::testThat]
biodb.TRACE[2025-08-02 16:01:38.965][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-08-02 16:01:38.976][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:38.979][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:38.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:38.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:38.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:39.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:39.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:39.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:39.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:39.013][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.014][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.016][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.034][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:39.035][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:39.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.037][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.064][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:39.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:39.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.068][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:39.069][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:39.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.071][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:39.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:39.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.076][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:39.077][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:39.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.079][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:39.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:39.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.084][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.085][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.086][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.091][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:39.092][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:39.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.094][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.095][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:39.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:39.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.099][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:39.100][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.102][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.103][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:39.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.107][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:39.108][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:39.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:39.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:39.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.114][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:39.115][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:39.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.117][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.118][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:39.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:39.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.122][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:39.123][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:39.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.125][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.126][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:39.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:39.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.130][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:39.131][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:39.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:39.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:39.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:39.210][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-08-02 16:01:39.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:39.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:39.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:39.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:39.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.256][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-02 16:01:39.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-02 16:01:39.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.259][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-02 16:01:39.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-02 16:01:39.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.263][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-02 16:01:39.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-02 16:01:39.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.267][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-02 16:01:39.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-02 16:01:39.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.348][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.349][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.350][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.372][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.373][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.375][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:39.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:39.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:39.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:39.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.393][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:39.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:39.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.397][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:39.398][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:39.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.399][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.400][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:39.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:39.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:39.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:39.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.414][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:39.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:39.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:39.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:39.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.421][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:39.422][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:39.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.424][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.425][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:39.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:39.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.446][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.447][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.448][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:39.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:39.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:39.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:39.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:39.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:39.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.470][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:39.471][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:39.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:39.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:39.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.487][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:39.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:39.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.491][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:39.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:39.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.495][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:39.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:39.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.498][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:39.499][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:39.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.501][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.502][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:39.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:39.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.512][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:01:39.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:39.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.516][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:01:39.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:39.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.519][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:01:39.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:39.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.523][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:01:39.524][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:39.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.526][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.527][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:01:39.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:39.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.537][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:39.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:39.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.540][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:39.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:39.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.544][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:39.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:39.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.548][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:39.549][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:39.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.550][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.551][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:39.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:39.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:39.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:39.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.565][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:39.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:39.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.568][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:39.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:39.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.572][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:39.573][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:39.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.575][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:39.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:39.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.597][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.598][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.599][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:39.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:39.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.614][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:39.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:39.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:39.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:39.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.621][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:39.622][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:39.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.624][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:39.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:39.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.635][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.663][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.669][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:39.670][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:39.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.676][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:39.677][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:39.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.678][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.682][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:39.683][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:39.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.685][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.688][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.689][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.691][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.695][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:39.696][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:39.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.698][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.701][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.702][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.704][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.708][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:39.709][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:39.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.714][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:01:39.715][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:39.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.717][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.721][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:39.722][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:39.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.723][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.727][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:39.728][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:39.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.730][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.745][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-08-02 16:01:39.777][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:39.778][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:39.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:39.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:39.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:39.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:39.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:39.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:39.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:39.789][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.790][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.816][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:39.817][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:39.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.819][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.820][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:39.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:39.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.824][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:39.825][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:39.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.827][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.828][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:39.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:39.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.832][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:39.833][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:39.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.835][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:39.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:39.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.840][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.840][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.842][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.847][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:39.848][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:39.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.850][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.851][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:39.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:39.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.855][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:39.856][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.857][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.858][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:39.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.862][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:39.863][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:39.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.865][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:39.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:39.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.870][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:39.871][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:39.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.872][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:39.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:39.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.877][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:39.878][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:39.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.881][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:39.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:39.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.885][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:39.886][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:39.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.888][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:39.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:39.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:39.929][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-08-02 16:01:39.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:39.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:39.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:39.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:39.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:39.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:39.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.972][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-02 16:01:39.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-02 16:01:39.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.976][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-02 16:01:39.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-02 16:01:39.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.980][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-02 16:01:39.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-02 16:01:39.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.983][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-02 16:01:39.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-02 16:01:39.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:39.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:39.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:39.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:39.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:39.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.060][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.061][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.063][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:40.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:40.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:40.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:40.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:40.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:40.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.109][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:40.110][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:40.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.111][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:40.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:40.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.122][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:40.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:40.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.126][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:40.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:40.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.133][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:40.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:40.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.136][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:40.137][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:40.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.140][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:40.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:40.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.149][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:40.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.160][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:40.161][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.163][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.164][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:40.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.185][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.186][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.187][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.209][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.210][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.212][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.222][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:40.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:40.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.226][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:40.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:40.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.230][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:40.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:40.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.233][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:40.234][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:40.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.236][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.237][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:40.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:40.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.246][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.250][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.254][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.257][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.258][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.260][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.261][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.271][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.274][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.278][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.282][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.283][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.284][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.285][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:40.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:40.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.302][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:40.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:40.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:40.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:40.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.309][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:40.310][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:40.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.312][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:40.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:40.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.333][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.334][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.336][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:40.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:40.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:40.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:40.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:40.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:40.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.357][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:40.358][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:40.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.360][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:40.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:40.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.371][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.372][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.373][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.377][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:40.378][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:40.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.380][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.384][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:40.385][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:40.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.386][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.390][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:40.391][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:40.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.393][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.396][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.397][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.399][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.403][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.404][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.406][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.409][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.410][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.412][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.416][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.417][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.418][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.422][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.423][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.425][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.428][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:40.429][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:40.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.431][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.435][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:40.436][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:40.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.438][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.441][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-08-02 16:01:40.443][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:40.444][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:40.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:40.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:40.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:40.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:40.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:40.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:40.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:40.459][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.460][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.461][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.466][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:40.467][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:40.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.469][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.470][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:40.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:40.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.474][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:40.475][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:40.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.476][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.477][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:40.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:40.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.481][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:40.482][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:40.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:40.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:40.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.489][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.490][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.491][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.496][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.497][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.499][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.500][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.504][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:40.505][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.506][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.508][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:40.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.511][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.512][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.514][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.519][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:40.520][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:40.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.521][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:40.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:40.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.526][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:40.527][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.529][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.530][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:40.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.534][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:40.535][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:40.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.537][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:40.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:40.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:40.578][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-08-02 16:01:40.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:40.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:40.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:40.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:40.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.602][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-02 16:01:40.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-02 16:01:40.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.606][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-02 16:01:40.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-02 16:01:40.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.609][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-02 16:01:40.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-02 16:01:40.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.616][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-02 16:01:40.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-02 16:01:40.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:40.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.684][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.685][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.686][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.697][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:40.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:40.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:40.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:40.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.704][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:40.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:40.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.708][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:40.709][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:40.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:40.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:40.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:40.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:40.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:40.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:40.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:40.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:40.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.732][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:40.733][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:40.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.735][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:40.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:40.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.756][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.757][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.759][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.770][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.777][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.781][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.784][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.785][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.787][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.788][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.808][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.809][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.811][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.833][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.834][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.835][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.846][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:40.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:40.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.850][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:40.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:40.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.853][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:40.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:40.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.857][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:40.858][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:40.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.860][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.861][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:40.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:40.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.870][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.874][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.878][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.881][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.882][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.884][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.885][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:40.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:40.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:40.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:40.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:40.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:40.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.905][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:40.906][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:40.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.908][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:40.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:40.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:40.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:40.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:40.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:40.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:40.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:40.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.930][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:40.931][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:40.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.936][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.937][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:40.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:40.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.946][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:40.947][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:40.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.949][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.953][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:40.954][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:40.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.955][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.959][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:40.960][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:40.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.962][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.965][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:40.966][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:40.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.968][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.972][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.973][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:40.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.975][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.978][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.979][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:40.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.981][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.985][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.986][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:40.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.988][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.991][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.992][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:40.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:40.994][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:40.998][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.999][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:40.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.000][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.004][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:41.005][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:41.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.007][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.010][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:41.011][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:41.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.013][ef$get] fields variable is a list.
biodb.INFO [2025-08-02 16:01:41.019][biodb::testThat]
biodb.INFO [2025-08-02 16:01:41.020][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-08-02 16:01:41.021][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-02 16:01:41.022][biodb::testThat]
biodb.DEBUG[2025-08-02 16:01:41.024][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-08-02 16:01:41.026][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
fscache.INFO [2025-08-02 16:01:41.029][cch$loadContents] Load 3 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:41.036][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml.
fscache.DEBUG[2025-08-02 16:01:41.039][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml.
fscache.DEBUG[2025-08-02 16:01:41.043][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml.
biodb.DEBUG[2025-08-02 16:01:41.044][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:41.045][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-08-02 16:01:41.046][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:41.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:41.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:41.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:41.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:41.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:41.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:41.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:41.058][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.059][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.060][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.065][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:41.066][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:41.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.068][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.069][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:41.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:41.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.073][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:41.074][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:41.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.075][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:41.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:41.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.080][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:41.081][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:41.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.083][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:41.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:41.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.088][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:41.089][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:41.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.090][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:41.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:41.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.095][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:41.096][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:41.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.099][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:41.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:41.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.103][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:41.108][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:41.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.110][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:41.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:41.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.114][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:41.115][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:41.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.117][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:41.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:41.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.122][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:41.123][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:41.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.124][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.126][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:41.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:41.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.129][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:41.130][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:41.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.133][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:41.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:41.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.137][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:41.138][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:41.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:41.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:41.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:41.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:41.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:41.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:41.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:41.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:41.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:41.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:41.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:41.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:41.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:41.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:41.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:41.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:41.180][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.181][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.183][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.188][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:41.189][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:41.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.190][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.192][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:41.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:41.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.195][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:41.196][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:41.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.198][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.199][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:41.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:41.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.203][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:41.204][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:41.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.206][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:41.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:41.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.211][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:41.212][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:41.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.213][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:41.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:41.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.218][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:41.219][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:41.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.222][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:41.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:41.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.226][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:41.226][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:41.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.228][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.229][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:41.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:41.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.233][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:41.234][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:41.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.236][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:41.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:41.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.241][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:41.241][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:41.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.243][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.244][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:41.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:41.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.248][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:41.249][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:41.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.251][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.252][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:41.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:41.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.256][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:41.257][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:41.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.258][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:41.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:41.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:41.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:41.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:41.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:41.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:41.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:41.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:41.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:41.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:41.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:41.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:41.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:41.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:41.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:41.303][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.304][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.305][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.310][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:41.311][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:41.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.313][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.314][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:41.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:41.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.318][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:41.319][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:41.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.320][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:41.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:41.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.325][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:41.326][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:41.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.328][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:41.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:41.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.333][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:41.334][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:41.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.335][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:41.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:41.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.340][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:41.341][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:41.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.343][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.344][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:41.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:41.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.348][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:41.349][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:41.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.350][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.352][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:41.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:41.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.355][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:41.356][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:41.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.358][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:41.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:41.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.363][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:41.364][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:41.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.365][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.367][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:41.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:41.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.370][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:41.371][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:41.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.373][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.374][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:41.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:41.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.378][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:41.379][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:41.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.381][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:41.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:41.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:41.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:41.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:41.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:41.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:41.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:41.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:41.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:41.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:41.447][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-08-02 16:01:41.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-08-02 16:01:41.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-08-02 16:01:41.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-08-02 16:01:41.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-08-02 16:01:41.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-08-02 16:01:41.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-08-02 16:01:41.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-08-02 16:01:41.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-08-02 16:01:41.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-08-02 16:01:41.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-08-02 16:01:41.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-08-02 16:01:41.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-08-02 16:01:41.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-08-02 16:01:41.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-08-02 16:01:41.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-08-02 16:01:41.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-08-02 16:01:41.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-08-02 16:01:41.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-08-02 16:01:41.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-02 16:01:41.493][biodb::testThat]
biodb.INFO [2025-08-02 16:01:41.494][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-08-02 16:01:41.495][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-02 16:01:41.496][biodb::testThat]
biodb.TRACE[2025-08-02 16:01:41.498][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:41.499][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:41.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.501][ef$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:41.502][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-08-02 16:01:41.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:41.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:41.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:41.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:41.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.531][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:41.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:41.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:41.537][function(conn, opt)] With value "squalene".
sched.DEBUG[2025-08-02 16:01:41.542][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-08-02 16:01:41.560][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:41.566][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-08-02 16:01:41.567][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-02 16:01:41.584][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:41.615][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:41.619][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-02 16:01:41.620][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:41.621][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-08-02 16:01:41.631][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:41.632][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:41.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.634][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.635][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:41.636][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:41.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.637][ef$get] fields variable is a list.
biodb.INFO [2025-08-02 16:01:41.641][biodb::testThat]
biodb.INFO [2025-08-02 16:01:41.642][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-08-02 16:01:41.642][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-02 16:01:41.643][biodb::testThat]
biodb.TRACE[2025-08-02 16:01:41.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:41.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:41.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:41.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:41.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.671][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:41.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:41.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:01:41.723][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:41.729][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:41.732][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-02 16:01:41.733][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.INFO [2025-08-02 16:01:41.745][biodb::testThat]
biodb.INFO [2025-08-02 16:01:41.746][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-08-02 16:01:41.747][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-02 16:01:41.748][biodb::testThat]
biodb.TRACE[2025-08-02 16:01:41.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:41.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:41.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:41.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:41.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:41.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:41.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:41.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:41.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:41.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:41.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:41.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:41.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.778][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-02 16:01:41.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-02 16:01:41.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.782][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-02 16:01:41.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-02 16:01:41.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.785][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-02 16:01:41.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-02 16:01:41.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.789][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-02 16:01:41.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-02 16:01:41.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:41.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:41.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:41.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:41.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:41.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:41.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:41.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:41.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:41.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:41.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:41.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:41.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.823][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-02 16:01:41.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-02 16:01:41.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.826][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-02 16:01:41.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-02 16:01:41.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.830][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-02 16:01:41.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-02 16:01:41.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:41.834][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-02 16:01:41.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-02 16:01:41.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:41.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-02 16:01:41.842][biodb::testThat]
biodb.INFO [2025-08-02 16:01:41.843][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-08-02 16:01:41.843][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-02 16:01:41.844][biodb::testThat]
biodb.INFO [2025-08-02 16:01:41.851][biodb::testThat]
biodb.INFO [2025-08-02 16:01:41.852][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-08-02 16:01:41.853][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-02 16:01:41.854][biodb::testThat]
biodb.INFO [2025-08-02 16:01:41.860][biodb::testThat]
biodb.INFO [2025-08-02 16:01:41.861][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-08-02 16:01:41.862][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-02 16:01:41.863][biodb::testThat]
biodb.DEBUG[2025-08-02 16:01:41.866][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
sched.TRACE[2025-08-02 16:01:42.998][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440).
biodb.INFO [2025-08-02 16:01:44.048][biodb::testThat]
biodb.INFO [2025-08-02 16:01:44.068][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-08-02 16:01:44.069][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-02 16:01:44.070][biodb::testThat]
biodb.TRACE[2025-08-02 16:01:44.076][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:44.077][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:44.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.079][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.080][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:44.081][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:44.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.083][ef$get] fields variable is a list.
biodb.INFO [2025-08-02 16:01:44.085][biodb::testThat]
biodb.INFO [2025-08-02 16:01:44.086][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-08-02 16:01:44.087][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-02 16:01:44.088][biodb::testThat]
biodb.TRACE[2025-08-02 16:01:44.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:44.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:44.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:44.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:44.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:44.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:44.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:01:44.203][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:44.206][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:44.209][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-02 16:01:44.210][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-02 16:01:44.290][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:44.293][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:44.296][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-02 16:01:44.297][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.TRACE[2025-08-02 16:01:44.308][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-02 16:01:44.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-02 16:01:44.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:01:44.340][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:44.342][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:44.344][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-02 16:01:44.345][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:44.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:44.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:44.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:44.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:44.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:44.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:44.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:44.357][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-08-02 16:01:44.404][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:44.405][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:44.409][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml.
biodb.DEBUG[2025-08-02 16:01:44.410][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:44.411][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:44.412][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:44.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:44.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:44.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:44.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:44.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:44.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:44.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:44.424][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.425][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.427][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.432][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:44.433][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:44.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.435][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.436][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:44.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:44.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.440][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:44.441][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:44.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.442][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.444][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:44.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:44.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.448][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:44.449][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:44.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:44.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:44.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.455][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:44.456][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:44.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.458][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:44.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:44.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.463][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:44.464][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:44.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.465][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.467][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:44.468][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.469][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.470][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:44.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.474][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:44.475][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:44.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:44.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:44.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.482][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:44.483][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:44.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.485][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:44.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:44.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.490][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:44.491][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:44.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.492][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.493][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:44.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:44.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.497][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:44.498][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:44.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.500][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.501][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:44.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:44.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:44.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:44.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:44.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:44.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:44.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:44.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:44.545][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-08-02 16:01:44.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:01:44.566][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:44.569][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:44.571][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-02 16:01:44.571][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:44.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:44.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:44.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:44.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:44.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:44.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:44.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:44.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:44.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:44.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:44.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:44.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:44.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:44.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:44.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:44.616][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-08-02 16:01:44.616][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:44.618][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:44.621][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml.
biodb.DEBUG[2025-08-02 16:01:44.622][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:44.623][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:44.624][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:44.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:44.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:44.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:44.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:44.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:44.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:44.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:44.636][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.637][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.639][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.644][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:44.645][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:44.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.647][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.648][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:44.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:44.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.656][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:44.657][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:44.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.658][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:44.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:44.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.663][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:44.664][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:44.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.666][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:44.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:44.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.671][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:44.672][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:44.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.674][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:44.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:44.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.678][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:44.679][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:44.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.681][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.682][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:44.683][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.685][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.686][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:44.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.690][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:44.691][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:44.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.693][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:44.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:44.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.698][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:44.699][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:44.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.700][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:44.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:44.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.705][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:44.706][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:44.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.708][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.709][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:44.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:44.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.713][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:44.714][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:44.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.716][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.717][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:44.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:44.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:44.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:44.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:44.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:44.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:44.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:44.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:44.758][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-08-02 16:01:44.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:01:44.785][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:44.787][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:44.790][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-02 16:01:44.791][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:44.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:44.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:44.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:44.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:44.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:44.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:44.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:44.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:44.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:44.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:44.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:44.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:44.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:44.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:44.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:44.826][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-08-02 16:01:44.827][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:44.828][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:44.831][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml.
biodb.DEBUG[2025-08-02 16:01:44.832][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:44.833][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:44.834][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:44.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:44.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:44.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:44.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:44.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:44.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:44.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:44.846][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.847][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.849][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.854][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:44.855][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:44.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.856][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.858][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:44.858][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:44.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.860][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.862][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:44.863][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:44.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.864][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.865][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:44.866][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:44.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.868][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.869][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:44.870][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:44.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.872][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.873][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:44.874][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.876][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.877][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:44.878][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:44.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.881][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:44.882][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:44.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.883][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:44.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:44.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.888][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:44.889][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:44.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.891][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.892][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:44.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:44.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.896][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:44.897][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:44.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.899][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:44.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:44.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:44.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:44.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:44.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:44.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:44.937][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-08-02 16:01:44.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:44.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:44.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:44.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:44.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:44.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:44.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:44.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:44.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:44.969][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-08-02 16:01:44.970][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:44.972][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:44.975][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml.
biodb.DEBUG[2025-08-02 16:01:44.976][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:44.977][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:44.978][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:44.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:44.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:44.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:44.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:44.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:44.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:44.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:44.990][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.991][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.993][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:44.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:44.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:44.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:44.998][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:44.999][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:45.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.002][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:45.003][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:45.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.005][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.006][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:45.007][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:45.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.009][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.010][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:45.011][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:45.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.013][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.014][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:45.015][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:45.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.016][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.018][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:45.019][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.020][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.021][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:45.022][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:45.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.024][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.025][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:45.026][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:45.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.028][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:45.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:45.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.033][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:45.034][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:45.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.036][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.037][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:45.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:45.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.041][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:45.042][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:45.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.044][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:45.082][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-08-02 16:01:45.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:45.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:45.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:45.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:45.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:45.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:45.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:45.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:45.127][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-08-02 16:01:45.128][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:45.129][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:45.133][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml.
biodb.DEBUG[2025-08-02 16:01:45.134][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:45.135][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:45.136][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:45.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:45.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:45.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:45.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:45.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:45.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:45.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:45.148][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.149][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.150][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.155][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:45.156][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:45.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.159][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:45.160][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:45.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.162][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.163][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:45.164][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:45.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.166][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.167][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:45.168][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:45.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.170][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.171][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:45.172][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:45.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.174][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.175][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:45.176][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.178][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.179][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:45.180][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:45.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.182][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.183][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:45.184][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:45.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.185][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:45.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:45.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.191][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:45.192][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:45.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.194][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.195][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:45.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:45.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.199][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:45.200][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:45.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.201][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:45.240][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-08-02 16:01:45.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:45.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:45.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:45.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:45.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:45.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:45.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:45.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:45.273][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-08-02 16:01:45.274][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:45.275][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:45.280][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml.
biodb.DEBUG[2025-08-02 16:01:45.281][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:45.282][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:45.283][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:45.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:45.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:45.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:45.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:45.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:45.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:45.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:45.295][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.296][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.298][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.303][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:45.304][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:45.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.306][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.307][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:45.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:45.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.311][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:45.312][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:45.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.314][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.315][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:45.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:45.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.319][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:45.320][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:45.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.321][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:45.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:45.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.326][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:45.327][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:45.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.329][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:45.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:45.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.334][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:45.335][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:45.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.337][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.338][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:45.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:45.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.342][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:45.343][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.344][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.345][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:45.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.349][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:45.350][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:45.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.352][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:45.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:45.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.357][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:45.358][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:45.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.360][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:45.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:45.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.365][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:45.366][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:45.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.368][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.369][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:45.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:45.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.372][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:45.373][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:45.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.375][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.376][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:45.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:45.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:45.421][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-08-02 16:01:45.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:45.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:45.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:45.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:45.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:45.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:45.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:45.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:45.448][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-08-02 16:01:45.449][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:45.451][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:45.457][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml.
biodb.DEBUG[2025-08-02 16:01:45.458][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:45.459][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:45.461][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:45.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:45.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:45.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:45.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:45.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:45.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:45.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:45.477][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.478][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.486][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:45.487][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:45.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.489][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.490][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:45.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:45.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.494][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:45.495][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:45.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.497][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.499][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:45.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:45.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.503][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:45.504][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:45.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.506][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:45.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:45.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.512][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:45.513][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:45.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.515][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:45.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:45.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.520][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:45.521][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:45.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.523][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.524][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:45.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:45.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.529][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:45.530][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.533][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:45.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.537][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:45.538][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:45.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.540][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:45.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:45.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.546][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:45.547][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:45.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.549][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:45.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:45.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.555][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:45.556][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:45.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.558][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.559][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:45.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:45.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.563][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:45.564][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:45.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.566][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.567][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:45.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:45.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:45.622][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-08-02 16:01:45.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:45.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:45.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:45.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:45.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:45.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:45.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:45.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:45.644][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-08-02 16:01:45.645][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:45.646][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:45.650][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml.
biodb.DEBUG[2025-08-02 16:01:45.651][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:45.653][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:45.654][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:45.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:45.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:45.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:45.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:45.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:45.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:45.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:45.666][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.667][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.668][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.673][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:45.674][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:45.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.676][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.677][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:45.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:45.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.681][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:45.682][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:45.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.684][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:45.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:45.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.689][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:45.690][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:45.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.691][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:45.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:45.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.696][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:45.697][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:45.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.699][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:45.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:45.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.704][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:45.705][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:45.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.707][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.708][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:45.709][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.712][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:45.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.716][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:45.717][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:45.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.719][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:45.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:45.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.724][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:45.725][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:45.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.726][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.728][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:45.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:45.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.731][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:45.732][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:45.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.734][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.735][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:45.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:45.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.739][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:45.740][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:45.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.746][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:45.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:45.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:45.788][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-08-02 16:01:45.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:45.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:45.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:45.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:45.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:45.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:45.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:45.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:45.809][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-08-02 16:01:45.810][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:45.811][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:45.815][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml.
biodb.DEBUG[2025-08-02 16:01:45.816][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:45.818][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:45.819][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:45.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:45.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:45.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:45.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:45.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:45.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:45.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:45.831][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.832][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.834][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.838][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:45.839][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:45.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.841][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.842][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:45.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:45.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.846][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:45.847][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:45.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.849][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.850][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:45.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:45.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.854][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:45.855][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:45.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.857][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:45.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:45.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.862][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:45.862][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:45.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.864][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:45.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:45.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.869][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:45.870][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:45.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.872][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.873][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:45.874][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.876][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.877][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:45.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.881][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:45.882][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:45.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.883][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:45.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:45.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.888][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:45.889][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:45.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.895][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:45.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:45.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.900][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:45.901][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:45.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.903][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.904][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:45.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:45.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.908][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:45.909][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:45.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.910][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:45.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:45.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:45.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:45.952][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-08-02 16:01:45.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:45.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:45.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:45.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:45.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:45.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:45.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:45.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:45.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:45.973][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-08-02 16:01:45.974][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:45.976][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:45.979][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml.
biodb.DEBUG[2025-08-02 16:01:45.980][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:45.982][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:45.983][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:45.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:45.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:45.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:45.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:45.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:45.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:45.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:45.994][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.995][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:45.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:45.997][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:45.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:45.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.002][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:46.003][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:46.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.005][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.006][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:46.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:46.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.010][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:46.011][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:46.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.013][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:46.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:46.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.017][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:46.018][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:46.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.020][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:46.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:46.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.025][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.026][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.028][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.033][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:46.034][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:46.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.035][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.037][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:46.038][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.039][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.044][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:46.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.048][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.049][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.056][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:46.057][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:46.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.058][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:46.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:46.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.063][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:46.064][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:46.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.066][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.067][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:46.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:46.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.071][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:46.072][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:46.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.074][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.075][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:46.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:46.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:46.115][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-08-02 16:01:46.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:46.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:46.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:46.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:46.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:46.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:46.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:46.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:46.137][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-08-02 16:01:46.138][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:46.139][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:46.143][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml.
biodb.DEBUG[2025-08-02 16:01:46.144][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:46.145][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:46.146][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:46.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:46.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:46.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:46.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:46.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:46.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:46.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:46.158][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.159][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.161][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.166][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:46.167][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:46.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.170][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:46.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:46.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.173][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:46.174][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:46.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.176][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.177][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:46.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:46.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.181][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:46.182][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:46.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.184][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:46.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:46.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.188][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.193][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.195][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.200][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:46.201][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:46.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.203][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.204][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:46.205][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.207][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.208][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:46.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.211][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.212][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.214][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.219][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:46.220][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:46.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.223][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:46.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:46.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.226][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:46.227][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:46.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.229][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.230][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:46.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:46.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.234][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:46.235][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:46.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.237][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:46.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:46.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:46.279][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-08-02 16:01:46.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:46.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:46.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:46.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:46.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:46.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:46.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:46.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:46.301][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-08-02 16:01:46.301][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:46.303][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:46.307][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml.
biodb.DEBUG[2025-08-02 16:01:46.308][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:46.309][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:46.310][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:46.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:46.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:46.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:46.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:46.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:46.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:46.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:46.322][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.323][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.325][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.330][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:46.331][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:46.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.334][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:46.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:46.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.338][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:46.339][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:46.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.345][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.346][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:46.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:46.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.349][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:46.350][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:46.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.352][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:46.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:46.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.357][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.358][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.360][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.364][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:46.365][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:46.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.367][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.368][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:46.369][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.371][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.372][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:46.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.376][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.377][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.378][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.383][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:46.384][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:46.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.386][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.387][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:46.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:46.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.391][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:46.392][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:46.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.394][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.395][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:46.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:46.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.399][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:46.400][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:46.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.401][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:46.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:46.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:46.443][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-08-02 16:01:46.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:46.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:46.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:46.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:46.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:46.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:46.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:46.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:46.465][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-08-02 16:01:46.466][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:46.467][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:46.470][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml.
biodb.DEBUG[2025-08-02 16:01:46.471][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:46.472][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:46.473][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:46.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:46.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:46.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:46.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:46.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:46.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:46.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:46.484][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.485][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.491][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.496][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:46.497][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:46.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.499][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.500][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:46.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:46.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.504][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:46.505][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:46.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.506][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.507][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:46.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:46.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.511][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:46.512][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:46.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.514][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.515][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.516][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.518][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.519][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:46.520][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:46.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.521][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.523][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:46.524][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.525][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.526][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:46.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.530][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.531][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.533][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.538][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:46.539][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:46.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.541][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:46.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:46.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.546][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:46.547][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:46.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.548][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.549][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:46.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:46.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.553][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:46.554][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:46.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.556][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:46.594][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-08-02 16:01:46.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:46.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:46.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:46.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:46.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:46.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:46.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:46.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:46.616][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-08-02 16:01:46.617][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:46.618][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:46.620][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml.
biodb.DEBUG[2025-08-02 16:01:46.621][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:46.623][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:46.624][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:46.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:46.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:46.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:46.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:46.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:46.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:46.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:46.640][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.641][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.642][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.647][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:46.648][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:46.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.650][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.651][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:46.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:46.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.655][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:46.655][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:46.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.657][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.658][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:46.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:46.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.662][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:46.663][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:46.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.666][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.667][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.669][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.670][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:46.671][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:46.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.674][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:46.675][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.676][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.677][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:46.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.681][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.682][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.684][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.689][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:46.690][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:46.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.692][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.693][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:46.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:46.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.697][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:46.698][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:46.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.699][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.700][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:46.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:46.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.704][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:46.705][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:46.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.707][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:46.745][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-08-02 16:01:46.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:46.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:46.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:46.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:46.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:46.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:46.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:46.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:46.767][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-08-02 16:01:46.768][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:46.769][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:46.773][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml.
biodb.DEBUG[2025-08-02 16:01:46.774][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:46.775][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:46.776][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:46.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:46.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:46.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:46.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:46.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:46.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:46.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:46.792][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.793][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.794][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.799][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:46.800][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:46.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.802][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.803][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:46.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:46.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.807][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:46.808][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:46.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.809][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.811][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:46.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:46.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.814][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:46.815][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:46.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.817][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:46.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:46.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.822][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.823][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.825][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.830][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:46.831][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:46.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.833][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.834][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:46.835][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.837][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.838][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:46.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.842][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.843][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.844][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:46.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.849][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:46.850][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:46.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.852][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.853][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:46.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:46.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.857][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:46.858][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:46.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.860][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.861][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:46.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:46.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.865][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:46.866][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:46.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.867][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.869][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:46.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:46.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:46.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:46.910][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-08-02 16:01:46.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:46.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:46.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:46.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:46.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:46.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:46.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:46.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:46.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:46.935][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-08-02 16:01:46.936][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:46.938][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:46.942][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml.
biodb.DEBUG[2025-08-02 16:01:46.943][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:46.944][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:46.945][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:46.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:46.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:46.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:46.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:46.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:46.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:46.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:46.956][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.957][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.959][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:46.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:46.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.964][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:46.965][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:46.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.967][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.968][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:46.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:46.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.972][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:46.973][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:46.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.974][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:46.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:46.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.979][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:46.980][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:46.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.982][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:46.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:46.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.987][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.988][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:46.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.995][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:46.996][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:46.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:46.998][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:46.999][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:47.000][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.003][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:47.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.006][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.007][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.009][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.014][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:47.015][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:47.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.017][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:47.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:47.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.022][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:47.023][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:47.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.024][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.026][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:47.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:47.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.029][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:47.030][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:47.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.033][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:47.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:47.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:47.074][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-08-02 16:01:47.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:47.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:47.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:47.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:47.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:47.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:47.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:47.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:47.099][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-08-02 16:01:47.100][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:47.102][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:47.105][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml.
biodb.DEBUG[2025-08-02 16:01:47.106][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:47.108][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:47.109][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:47.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:47.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:47.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:47.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:47.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:47.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:47.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:47.120][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.121][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.123][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.128][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:47.129][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:47.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.131][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.132][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:47.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:47.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.136][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:47.137][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:47.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.138][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.140][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:47.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:47.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.143][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:47.144][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:47.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.146][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.147][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:47.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:47.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.151][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:47.152][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:47.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.154][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:47.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:47.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.159][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:47.160][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:47.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.161][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.162][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:47.163][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.165][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.166][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:47.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.170][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.171][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.173][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.178][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:47.179][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:47.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.180][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.182][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:47.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.185][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:47.186][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:47.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.188][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.189][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:47.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:47.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.193][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:47.194][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:47.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.196][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:47.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:47.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:47.242][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-08-02 16:01:47.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:47.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:47.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:47.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:47.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:47.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:47.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:47.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:47.263][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-08-02 16:01:47.264][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:47.265][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:47.269][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml.
biodb.DEBUG[2025-08-02 16:01:47.270][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:47.271][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:47.272][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:47.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:47.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:47.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:47.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:47.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:47.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:47.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:47.284][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.285][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.287][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.291][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:47.292][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:47.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.294][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.295][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:47.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:47.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.299][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:47.300][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:47.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.302][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.303][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:47.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:47.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.307][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:47.308][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:47.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.309][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:47.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:47.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.314][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:47.315][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:47.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.317][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:47.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:47.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.322][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:47.323][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:47.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.325][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.326][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:47.327][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.329][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.330][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:47.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.333][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.336][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.341][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:47.342][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:47.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.344][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:47.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:47.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.349][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:47.350][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:47.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.352][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.353][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:47.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:47.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.356][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:47.357][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:47.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.359][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:47.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:47.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:47.405][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-08-02 16:01:47.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:47.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:47.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:47.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:47.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:47.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:47.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:47.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:47.426][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-08-02 16:01:47.427][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:47.428][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:47.432][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml.
biodb.DEBUG[2025-08-02 16:01:47.433][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:47.434][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:47.435][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:47.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:47.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:47.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:47.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:47.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:47.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:47.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:47.447][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.448][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.455][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:47.456][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:47.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.458][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.459][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:47.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:47.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.463][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:47.464][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:47.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.467][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:47.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:47.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.470][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:47.471][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:47.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:47.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:47.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.478][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:47.479][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:47.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.481][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:47.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:47.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.486][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:47.487][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:47.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.489][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.490][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:47.491][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.492][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.494][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:47.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.497][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.498][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.500][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.505][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:47.506][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:47.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.508][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:47.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:47.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.513][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:47.514][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:47.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.515][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.517][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:47.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:47.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.525][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:47.526][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:47.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.528][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.529][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:47.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:47.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:47.570][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-08-02 16:01:47.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:47.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:47.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:47.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:47.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:47.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:47.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:47.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:47.591][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-08-02 16:01:47.592][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:47.594][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:47.597][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml.
biodb.DEBUG[2025-08-02 16:01:47.598][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:47.599][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:47.600][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:47.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:47.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:47.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:47.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:47.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:47.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:47.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:47.612][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.613][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.615][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.620][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:47.620][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:47.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.622][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.623][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:47.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:47.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.627][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:47.628][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:47.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.630][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:47.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:47.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.635][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:47.636][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:47.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.638][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:47.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:47.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.643][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:47.644][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:47.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.646][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:47.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:47.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.650][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:47.651][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:47.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.653][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.654][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:47.655][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.657][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.658][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:47.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.662][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.663][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.674][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:47.675][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:47.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.677][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.678][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:47.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:47.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.681][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:47.682][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:47.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.684][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.685][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:47.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:47.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.689][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:47.690][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:47.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.692][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:47.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:47.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:47.734][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-08-02 16:01:47.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:47.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:47.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:47.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:47.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:47.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:47.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:47.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:47.755][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-08-02 16:01:47.756][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:47.758][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:47.761][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml.
biodb.DEBUG[2025-08-02 16:01:47.762][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:47.763][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:47.764][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:47.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:47.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:47.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:47.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:47.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:47.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:47.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:47.776][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.777][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.784][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:47.785][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:47.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.786][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.788][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:47.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:47.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.791][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:47.792][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:47.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.794][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.795][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:47.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:47.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.799][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:47.800][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:47.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.802][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:47.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:47.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.807][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:47.808][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:47.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.810][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:47.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:47.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.818][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:47.820][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:47.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.821][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.822][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:47.823][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.825][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.826][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:47.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.830][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.831][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.833][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:47.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.837][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:47.838][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:47.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.840][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:47.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:47.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.845][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:47.846][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:47.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.848][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.849][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:47.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:47.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.853][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:47.854][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:47.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.855][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.856][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:47.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:47.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:47.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:47.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:47.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:47.897][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-08-02 16:01:47.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:01:47.924][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:47.927][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:47.930][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-02 16:01:47.931][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:47.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:47.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:47.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:47.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:47.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:47.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:47.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:47.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:47.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:47.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:47.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:47.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:47.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:47.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:47.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:47.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:47.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:47.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:47.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:47.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:47.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:47.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:47.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:47.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:47.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:47.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:47.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:01:48.467][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:48.469][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:48.471][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/63dc67d905e130c19900bd338bad7ba9.content.
sched.DEBUG[2025-08-02 16:01:48.472][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-02 16:01:48.475][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:48.477][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:48.480][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/287cac4c6e727656d926f26e3952924c.content.
sched.DEBUG[2025-08-02 16:01:48.481][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:48.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:48.493][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-08-02 16:01:48.494][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:48.495][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:48.499][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml.
biodb.DEBUG[2025-08-02 16:01:48.500][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:48.501][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:48.502][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:48.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.514][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:48.515][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:48.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.517][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:48.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:48.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.522][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:48.523][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:48.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.525][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.526][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:48.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:48.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.530][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:48.531][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:48.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.534][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:48.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:48.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.537][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:48.538][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:48.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.540][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:48.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:48.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.545][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:48.546][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:48.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.548][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:48.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:48.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.553][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:48.554][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:48.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.556][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.557][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:48.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:48.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.561][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:48.562][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.563][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.564][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:48.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.568][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.569][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.571][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.580][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:48.581][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:48.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.583][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:48.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:48.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.588][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:48.589][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:48.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.591][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.592][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:48.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:48.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.596][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:48.597][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:48.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.599][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:48.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:48.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:48.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:48.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:48.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:48.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:48.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:48.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:48.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:48.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:48.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:48.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:48.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:48.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:48.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:48.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:48.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:48.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:48.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:48.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:48.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:48.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.641][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-08-02 16:01:48.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:48.684][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-08-02 16:01:48.685][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:48.686][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:48.690][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml.
biodb.DEBUG[2025-08-02 16:01:48.691][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:48.692][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:48.693][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:48.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.705][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:48.706][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:48.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.708][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:48.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:48.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.713][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:48.714][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:48.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.716][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.717][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:48.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:48.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.721][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:48.722][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:48.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.723][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.729][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:48.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:48.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.733][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:48.734][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:48.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.736][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:48.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:48.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.740][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:48.741][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:48.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.743][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:48.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:48.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.748][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:48.749][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:48.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.751][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.752][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:48.753][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.755][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.756][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:48.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:48.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.759][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.760][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.762][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.767][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:48.768][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:48.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.770][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:48.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:48.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.775][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:48.776][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:48.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.778][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.779][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:48.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:48.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.782][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:48.783][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:48.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.785][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.786][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:48.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:48.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:48.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:48.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:48.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:48.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:48.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:48.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:48.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:48.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:48.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:48.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:48.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:48.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:48.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:48.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:48.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:48.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:48.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:48.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:48.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:48.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.828][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-08-02 16:01:48.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:01:48.855][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:48.857][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:48.860][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-02 16:01:48.861][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:48.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:48.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:48.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:48.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:48.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:48.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:48.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:48.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:48.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:48.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:48.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:48.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:01:49.325][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:49.327][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:49.330][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-02 16:01:49.331][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:49.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:49.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.787][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-02 16:01:49.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-02 16:01:49.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-02 16:01:49.797][biodb::testThat]
biodb.INFO [2025-08-02 16:01:49.798][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-08-02 16:01:49.799][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-02 16:01:49.800][biodb::testThat]
biodb.TRACE[2025-08-02 16:01:49.802][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-02 16:01:49.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-02 16:01:49.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.806][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-02 16:01:49.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-02 16:01:49.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.810][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-02 16:01:49.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-02 16:01:49.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:01:49.872][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:49.874][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:49.876][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-02 16:01:49.877][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:49.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:01:49.905][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:49.908][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:49.910][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-02 16:01:49.910][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:49.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:49.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:49.954][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:01:49.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:49.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:49.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:49.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:49.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:49.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:49.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:49.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:49.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:49.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:49.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:49.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.972][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:49.973][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:49.973][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:49.974][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:49.975][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:49.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:49.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:49.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.979][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:49.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:49.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.983][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.983][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:49.984][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:49.985][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:49.986][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:49.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.988][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.989][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:49.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:49.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:49.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:49.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:49.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:49.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:49.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:49.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:49.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.010][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-02 16:01:50.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:50.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:50.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:50.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:50.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:50.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:50.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:50.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:50.028][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:50.029][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:50.030][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:50.035][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:50.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.039][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.040][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.041][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.043][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.044][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:50.045][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:50.046][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.047][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.048][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.049][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:50.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.062][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-02 16:01:50.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:50.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:50.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:50.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:50.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:50.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:50.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:50.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.079][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:50.080][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:50.081][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:50.082][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:50.083][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:50.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.088][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.089][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.090][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.091][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:50.092][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:50.093][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.094][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.096][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.097][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:50.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.109][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-02 16:01:50.110][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:01:50.111][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:01:50.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:50.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:50.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:50.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:50.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:50.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:50.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:01:50.125][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:50.127][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:50.129][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-02 16:01:50.130][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:50.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:50.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:50.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:50.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:50.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:50.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:50.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:50.142][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2025-08-02 16:01:50.143][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:50.144][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:50.147][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml.
biodb.DEBUG[2025-08-02 16:01:50.148][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:50.149][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:50.150][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:50.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:50.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:50.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:50.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:50.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:50.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:50.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:50.162][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.163][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.165][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.170][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:50.171][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:50.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.174][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:50.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:50.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.177][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:50.178][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:50.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.185][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.186][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:50.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:50.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.190][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:50.191][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:50.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.193][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:50.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:50.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.198][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:50.199][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:50.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.200][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:50.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:50.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.205][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:50.206][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:50.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.208][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.209][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:50.210][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.212][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.213][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:50.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.216][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:50.217][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:50.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.219][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:50.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:50.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.224][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:50.225][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:50.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.227][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:50.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:50.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.232][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:50.233][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:50.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.235][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.236][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:50.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:50.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.240][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:50.241][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:50.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.242][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:50.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:50.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:50.285][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2025-08-02 16:01:50.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:50.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:50.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:50.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:50.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:50.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:50.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:50.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:50.306][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2025-08-02 16:01:50.307][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:50.309][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:50.312][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml.
biodb.DEBUG[2025-08-02 16:01:50.313][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:50.314][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:50.315][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:50.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:50.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:50.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:50.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:50.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:50.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:50.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:50.331][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.333][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.335][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.339][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:50.340][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:50.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.342][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.343][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:50.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:50.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.347][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:50.348][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:50.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.350][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.351][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:50.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:50.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.355][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:50.356][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:50.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.358][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:50.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:50.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.362][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:50.363][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:50.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.365][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:50.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:50.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.370][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:50.371][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:50.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.373][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.374][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:50.375][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.377][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.378][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:50.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.382][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:50.383][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:50.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.384][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:50.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:50.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.389][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:50.390][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:50.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.393][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:50.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:50.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.397][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:50.398][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:50.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.400][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.401][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:50.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:50.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.405][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:50.406][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:50.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.407][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.409][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:50.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:50.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:50.450][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2025-08-02 16:01:50.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:01:50.462][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:50.465][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:50.468][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-02 16:01:50.469][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:50.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:50.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:50.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:50.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:50.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:50.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:50.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:50.486][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2025-08-02 16:01:50.486][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:50.488][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:50.492][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml.
biodb.DEBUG[2025-08-02 16:01:50.494][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:50.495][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:50.496][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:50.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:50.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:50.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:50.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:50.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:50.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:50.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:50.508][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.509][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.510][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.515][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:50.516][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:50.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.518][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.519][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:50.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:50.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.523][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:50.524][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:50.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.526][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:50.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:50.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.531][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:50.532][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:50.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.534][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:50.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:50.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.539][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:50.540][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:50.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.541][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:50.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:50.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.546][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:50.547][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:50.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.549][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.550][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:50.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:50.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.554][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:50.555][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.557][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.558][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:50.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.562][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:50.563][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:50.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:50.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:50.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.570][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:50.570][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:50.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.572][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:50.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:50.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.577][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:50.578][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:50.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.580][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.581][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:50.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:50.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.585][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:50.586][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:50.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.588][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:50.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:50.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:50.635][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2025-08-02 16:01:50.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:50.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:50.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:50.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:50.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:50.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:50.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:50.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:50.656][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2025-08-02 16:01:50.657][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:50.658][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:50.663][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml.
biodb.DEBUG[2025-08-02 16:01:50.664][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:50.665][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:50.666][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:50.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:50.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:50.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:50.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:50.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:50.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:50.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:50.678][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.679][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.681][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.686][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:50.687][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:50.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.689][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.690][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:50.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:50.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.694][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:50.695][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:50.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.697][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.698][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:50.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:50.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.702][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:50.703][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:50.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.704][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:50.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:50.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.709][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:50.710][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:50.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.712][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:50.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:50.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.717][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:50.718][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:50.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.720][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.721][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:50.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:50.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.725][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:50.726][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.727][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.728][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:50.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.732][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:50.733][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:50.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.735][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:50.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:50.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.740][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:50.741][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:50.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.743][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.744][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:50.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:50.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.748][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:50.749][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:50.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.751][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.752][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:50.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:50.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.756][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:50.757][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:50.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.758][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:50.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:50.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:50.804][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2025-08-02 16:01:50.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:50.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:50.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:50.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:50.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:50.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:50.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:50.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:50.826][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2025-08-02 16:01:50.827][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:50.828][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:50.832][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml.
biodb.DEBUG[2025-08-02 16:01:50.833][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:50.834][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:50.835][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:50.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:50.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:50.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:50.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:50.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:50.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:50.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:50.847][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.848][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.849][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.854][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:50.855][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:50.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.857][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.858][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:50.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:50.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.862][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:50.863][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:50.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.865][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.866][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:50.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:50.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.870][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:50.871][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:50.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.872][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:50.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:50.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.877][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:50.878][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:50.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:50.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:50.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.885][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:50.886][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:50.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.888][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.889][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:50.890][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.892][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.893][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:50.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.896][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:50.897][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:50.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.899][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:50.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:50.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.904][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:50.905][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:50.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.907][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.908][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:50.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:50.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.912][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:50.917][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:50.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.919][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.920][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:50.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:50.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.924][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:50.925][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:50.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.927][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.928][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:50.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:50.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:50.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:50.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:50.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:50.968][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2025-08-02 16:01:50.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:50.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:50.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:50.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:51.003][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:01:51.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:51.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:51.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:51.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:51.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:51.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:51.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:51.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.042][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:51.047][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:51.048][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:51.049][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:51.050][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:51.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.054][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.055][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.056][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.057][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.058][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:51.059][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:51.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.061][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.063][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.064][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:51.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.076][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-02 16:01:51.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:51.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:51.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:51.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:51.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:51.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:51.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:51.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:51.095][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:51.095][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:51.096][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:51.097][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:51.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.101][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.102][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.103][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.106][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:51.106][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:51.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.108][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.110][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.111][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:51.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.123][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-02 16:01:51.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:51.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:51.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:51.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:51.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:51.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:51.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:51.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:51.142][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:51.143][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:51.144][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:51.145][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:51.146][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.147][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.149][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.150][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.151][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.152][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.153][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:51.154][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:51.155][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.156][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.159][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:51.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.172][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-02 16:01:51.172][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:01:51.173][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:01:51.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:51.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:51.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:51.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:51.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:51.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:51.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:01:51.190][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:51.193][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:51.195][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-08-02 16:01:51.196][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:51.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:51.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:51.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:51.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:51.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:51.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:51.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:51.207][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2025-08-02 16:01:51.208][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:51.209][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:51.212][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml.
biodb.DEBUG[2025-08-02 16:01:51.213][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:51.214][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:51.215][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:51.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:51.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:51.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:51.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:51.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:51.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:51.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:51.227][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.228][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.230][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.235][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:51.236][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:51.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.239][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:51.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:51.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.242][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:51.243][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:51.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.245][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.247][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:51.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:51.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.250][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:51.251][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:51.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.253][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:51.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:51.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.258][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:51.259][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:51.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.261][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:51.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:51.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.265][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:51.266][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:51.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.268][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.269][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:51.270][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.272][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.273][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:51.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.277][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:51.278][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:51.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.280][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:51.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:51.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.285][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:51.286][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:51.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.287][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.289][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:51.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:51.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.292][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:51.293][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:51.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.295][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.296][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:51.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:51.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.300][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:51.301][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:51.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.303][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:51.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:51.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:51.486][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2025-08-02 16:01:51.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:51.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:51.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:51.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:51.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:51.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:51.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:51.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:51.507][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2025-08-02 16:01:51.508][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:51.509][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:51.512][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml.
biodb.DEBUG[2025-08-02 16:01:51.513][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:51.514][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:51.515][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:51.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:51.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:51.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:51.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:51.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:51.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:51.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:51.526][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.527][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.529][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.534][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:51.535][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:51.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.536][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.538][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:51.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:51.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.541][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:51.542][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:51.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.544][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:51.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:51.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.549][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:51.550][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:51.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.552][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:51.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:51.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.556][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:51.557][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:51.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.559][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:51.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:51.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.564][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:51.565][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:51.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.566][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.567][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:51.568][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.570][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.571][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:51.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.575][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:51.576][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:51.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.578][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:51.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:51.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.582][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:51.583][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:51.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.585][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.586][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:51.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:51.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.590][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:51.591][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:51.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.594][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:51.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:51.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.598][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:51.599][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:51.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.600][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.602][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:51.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:51.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:51.646][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2025-08-02 16:01:51.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:51.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:51.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:51.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:51.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:51.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:51.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:51.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:51.671][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2025-08-02 16:01:51.672][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:51.673][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:51.677][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml.
biodb.DEBUG[2025-08-02 16:01:51.678][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:51.679][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:51.680][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:51.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:51.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:51.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:51.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:51.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:51.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:51.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:51.694][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.695][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.697][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.703][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:51.704][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:51.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.706][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.707][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:51.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:51.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.712][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:51.713][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:51.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.715][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:51.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:51.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.721][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:51.722][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:51.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.724][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:51.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:51.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.729][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:51.730][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:51.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.732][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:51.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:51.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.738][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:51.739][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:51.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.741][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.743][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:51.744][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.746][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.750][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:51.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.754][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:51.755][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:51.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.757][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:51.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:51.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.762][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:51.763][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:51.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.764][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.765][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:51.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:51.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.769][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:51.770][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:51.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.772][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.773][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:51.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:51.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.777][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:51.778][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:51.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:51.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:51.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:51.820][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2025-08-02 16:01:51.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:51.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:51.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:51.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:51.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:51.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:51.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:51.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:51.841][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2025-08-02 16:01:51.842][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:51.844][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:51.847][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml.
biodb.DEBUG[2025-08-02 16:01:51.848][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:51.849][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:51.850][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:51.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:51.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:51.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:51.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:51.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:51.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:51.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:51.862][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.863][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.864][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.869][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:51.870][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:51.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.872][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.873][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:51.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:51.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.877][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:51.878][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:51.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:51.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:51.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.885][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:51.886][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:51.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.887][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:51.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:51.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.892][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:51.893][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:51.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.895][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:51.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:51.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.900][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:51.901][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:51.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.903][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.904][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:51.905][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.906][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.907][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:51.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.911][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:51.912][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:51.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.914][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:51.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:51.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.919][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:51.920][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:51.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.921][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.923][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:51.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:51.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.926][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:51.927][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:51.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.929][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.930][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:51.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:51.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.934][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:51.935][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:51.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:51.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:51.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:51.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:51.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:51.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:51.978][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2025-08-02 16:01:51.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:51.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:51.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:51.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:51.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:51.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:51.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:51.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:51.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:51.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:51.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:51.999][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2025-08-02 16:01:52.000][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:52.002][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:52.005][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml.
biodb.DEBUG[2025-08-02 16:01:52.006][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:52.007][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:52.011][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:52.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:52.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:52.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:52.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:52.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:52.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:52.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:52.023][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.024][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.026][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.030][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:52.031][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:52.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.033][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.034][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:52.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:52.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.038][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:52.039][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:52.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.041][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.042][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:52.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:52.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.045][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:52.046][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:52.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.048][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:52.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:52.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.053][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.054][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.056][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.060][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:52.061][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:52.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.063][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.064][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:52.065][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.067][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.068][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:52.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.071][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.072][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.074][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.079][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:52.080][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:52.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.082][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:52.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:52.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.086][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:52.087][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:52.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.089][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.090][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:52.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:52.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.094][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:52.095][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:52.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.096][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:52.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:52.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:52.138][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2025-08-02 16:01:52.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:52.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:52.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:52.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:52.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:52.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:52.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:52.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:52.159][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2025-08-02 16:01:52.160][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:52.161][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:52.164][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml.
biodb.DEBUG[2025-08-02 16:01:52.165][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:52.166][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:52.167][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:52.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:52.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:52.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:52.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:52.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:52.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:52.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:52.179][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.180][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.182][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.187][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:52.188][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:52.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.190][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.191][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:52.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:52.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.195][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:52.195][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:52.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.197][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.199][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:52.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:52.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.202][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:52.203][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:52.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.205][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:52.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:52.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.210][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.211][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.212][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.217][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:52.218][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:52.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.220][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.221][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:52.222][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.224][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.225][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:52.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.229][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.230][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.231][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.236][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:52.237][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:52.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.239][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:52.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:52.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.244][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:52.245][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:52.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.246][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.248][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:52.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:52.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.251][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:52.252][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:52.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.254][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.255][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:52.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:52.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:52.299][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2025-08-02 16:01:52.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:52.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:52.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:52.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:52.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:52.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:52.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:52.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:52.319][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2025-08-02 16:01:52.320][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:52.322][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:52.325][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml.
biodb.DEBUG[2025-08-02 16:01:52.326][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:52.327][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:52.328][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:52.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:52.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:52.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:52.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:52.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:52.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:52.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:52.339][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.340][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.342][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.347][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:52.348][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:52.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.349][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.350][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:52.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:52.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.354][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:52.355][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:52.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.357][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:52.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:52.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.362][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:52.363][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:52.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.364][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:52.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:52.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.369][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.370][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.372][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.377][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:52.378][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:52.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.381][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:52.381][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.383][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.384][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:52.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.388][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.389][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.391][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.396][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:52.397][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:52.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.399][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.400][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:52.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:52.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.403][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:52.404][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:52.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.406][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.407][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:52.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:52.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.411][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:52.412][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:52.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.414][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:52.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:52.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:52.455][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2025-08-02 16:01:52.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:52.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:52.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:52.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:52.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:52.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:52.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:52.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:52.477][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2025-08-02 16:01:52.478][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:52.479][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:52.482][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml.
biodb.DEBUG[2025-08-02 16:01:52.483][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:52.485][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:52.486][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:52.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:52.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:52.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:52.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:52.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:52.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:52.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:52.497][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.498][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.500][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.505][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:52.506][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:52.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.508][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.509][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:52.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:52.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.513][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:52.514][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:52.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.515][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.517][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:52.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:52.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.520][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:52.521][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:52.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.523][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:52.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:52.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.531][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.532][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.534][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.539][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:52.540][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:52.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.542][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.543][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:52.544][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.545][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.546][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:52.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.550][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.551][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.553][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.557][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:52.558][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:52.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.560][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:52.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:52.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.565][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:52.566][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:52.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.568][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.569][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:52.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:52.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.572][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:52.573][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:52.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.575][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:52.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:52.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:52.616][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2025-08-02 16:01:52.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:01:52.628][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:52.631][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:52.633][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-02 16:01:52.634][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:52.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:52.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:52.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:52.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:52.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:52.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:52.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:52.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:52.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:52.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:52.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:52.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:52.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:52.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:52.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:52.665][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2025-08-02 16:01:52.666][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:52.667][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:52.672][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml.
biodb.DEBUG[2025-08-02 16:01:52.673][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:52.674][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:52.675][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:52.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:52.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:52.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:52.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:52.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:52.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:52.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:52.687][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.688][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.695][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:52.696][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:52.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.697][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.699][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:52.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:52.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.702][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:52.703][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:52.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.705][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.706][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:52.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:52.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.710][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:52.711][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:52.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.713][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:52.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:52.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.717][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.718][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.720][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.725][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:52.726][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:52.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.728][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.729][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:52.730][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.732][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.733][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:52.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.736][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.737][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.739][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.744][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:52.745][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:52.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.747][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:52.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:52.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.752][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:52.753][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:52.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.754][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.755][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:52.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:52.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.759][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:52.760][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:52.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.762][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:52.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:52.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:52.807][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2025-08-02 16:01:52.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:52.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:52.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:52.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:52.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:52.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:52.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:52.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:52.828][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2025-08-02 16:01:52.829][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:52.830][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:52.833][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml.
biodb.DEBUG[2025-08-02 16:01:52.834][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:52.835][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:52.836][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:52.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:52.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:52.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:52.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:52.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:52.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:52.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:52.848][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.849][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.851][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.855][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:52.856][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:52.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.858][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.859][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:52.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:52.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.863][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:52.864][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:52.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.865][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.867][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:52.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:52.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.870][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:52.871][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:52.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.873][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:52.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:52.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.878][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.879][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:52.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.885][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:52.886][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:52.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.888][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.889][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:52.890][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.892][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.893][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:52.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.896][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.897][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.899][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:52.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.904][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:52.905][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:52.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.907][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.908][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:52.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:52.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.912][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:52.913][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:52.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.914][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.915][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:52.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:52.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.919][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:52.920][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:52.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.922][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:52.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:52.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:52.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:52.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:52.963][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2025-08-02 16:01:52.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:52.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:52.975][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:01:52.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:52.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:52.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:52.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:52.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:52.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:52.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:52.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:52.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:52.993][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:52.994][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:52.995][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:52.996][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:52.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:52.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:52.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.000][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.004][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.005][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.006][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.009][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.010][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:53.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.022][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-02 16:01:53.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:53.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:53.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:53.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:53.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:53.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:53.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:53.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.040][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.041][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:53.042][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:53.043][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:53.044][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.045][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.046][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.053][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.055][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.056][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.056][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.057][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.060][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.061][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:53.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.073][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-02 16:01:53.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:53.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:53.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:53.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:53.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:53.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:53.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:53.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.090][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.091][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:53.092][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:53.093][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:53.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.097][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.101][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.102][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.103][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.103][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.104][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.107][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:53.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.119][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-02 16:01:53.120][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:01:53.121][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-02 16:01:53.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:53.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:53.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:53.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:53.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:53.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:53.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:53.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:01:53.232][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:53.234][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:53.236][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-02 16:01:53.237][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-02 16:01:53.239][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:53.242][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:53.244][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-02 16:01:53.245][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:53.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:53.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:53.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:53.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:53.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:53.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:53.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:53.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:53.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:53.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:53.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:53.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:53.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:53.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:53.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:53.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:53.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:53.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:53.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:53.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:53.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:53.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:53.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:53.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:53.311][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:01:53.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:53.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:53.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:53.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:53.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:53.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:53.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:53.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.329][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.330][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:53.331][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:53.331][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:53.332][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.333][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.334][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.336][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.339][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.340][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.341][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.342][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.343][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.345][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.346][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:53.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.358][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-02 16:01:53.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:53.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:53.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:53.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:53.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:53.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:53.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:53.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.404][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.405][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:53.406][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:53.407][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:53.408][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.410][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.412][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.413][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.415][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.416][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.425][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.427][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.429][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.430][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:53.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.442][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-02 16:01:53.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:53.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:53.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:53.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:53.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:53.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:53.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:53.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.469][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.470][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:53.471][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:53.472][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:53.473][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.474][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.475][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.478][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.481][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.482][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.483][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.486][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.488][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:53.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.502][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-02 16:01:53.503][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:01:53.504][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:01:53.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:53.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:53.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:53.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:53.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:53.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:53.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:01:53.521][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:53.524][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:53.527][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-08-02 16:01:53.528][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:53.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:53.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:53.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:53.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:53.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:53.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:53.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:53.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:53.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:53.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:53.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:53.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:53.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:53.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:53.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:53.575][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2025-08-02 16:01:53.576][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:53.577][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:53.581][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml.
biodb.DEBUG[2025-08-02 16:01:53.582][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:53.583][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:53.584][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:53.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:53.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:53.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:53.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:53.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:53.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:53.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:53.597][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:53.598][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:53.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.600][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:53.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:53.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.605][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:53.606][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:53.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.608][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.609][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:53.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:53.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.613][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:53.614][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:53.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.616][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:53.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:53.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.621][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:53.622][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:53.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.624][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:53.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:53.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.629][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:53.630][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:53.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.632][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:53.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:53.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.638][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:53.639][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:53.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.642][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:53.643][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:53.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.645][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.646][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:53.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:53.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.650][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.653][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.658][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:53.659][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:53.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.661][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:53.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:53.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.666][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:53.667][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:53.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.669][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.670][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:53.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:53.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.674][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:53.675][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:53.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.677][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:53.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:53.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:53.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:53.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:53.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:53.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:53.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:53.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:53.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:53.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:53.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:53.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:53.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:53.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:53.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:53.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:53.723][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2025-08-02 16:01:53.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:53.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:53.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:53.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:53.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:53.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:53.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:53.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:53.746][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2025-08-02 16:01:53.747][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:53.749][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:53.752][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml.
biodb.DEBUG[2025-08-02 16:01:53.753][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:53.754][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:53.755][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:53.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:53.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:53.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:53.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:53.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:53.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:53.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:53.767][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:53.768][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:53.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.770][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:53.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:53.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.775][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:53.776][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:53.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.778][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.779][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:53.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:53.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.783][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:53.784][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:53.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.785][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:53.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:53.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.791][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:53.792][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:53.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.793][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:53.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:53.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.798][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:53.799][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:53.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.801][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:53.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:53.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.806][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:53.807][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:53.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.809][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.810][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:53.811][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:53.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.812][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.814][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:53.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:53.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.817][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.818][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.820][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.825][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:53.826][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:53.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.828][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:53.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:53.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.833][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:53.834][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:53.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.836][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.837][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:53.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:53.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.844][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:53.845][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:53.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.847][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:53.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:53.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:53.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:53.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:53.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:53.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:53.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:53.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:53.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:53.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:53.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:53.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:53.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:53.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:53.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:53.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:53.888][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2025-08-02 16:01:53.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:53.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:53.900][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:01:53.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:53.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:53.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:53.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:53.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:53.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:53.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:53.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.918][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.918][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:53.919][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:53.920][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:53.921][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.922][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.923][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.925][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.926][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.927][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.928][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.929][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.930][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.934][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:53.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.947][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-02 16:01:53.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:53.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:53.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:53.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:53.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:53.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:53.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:53.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.964][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.965][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:53.966][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:53.967][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:53.968][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.971][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.973][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.975][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.977][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:53.978][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.979][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.980][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.981][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:53.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:53.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:53.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:53.993][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-02 16:01:53.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:53.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:53.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:54.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:54.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:54.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:54.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:54.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.011][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.012][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:54.013][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:54.014][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:54.014][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.018][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.022][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.023][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.023][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.027][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.028][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:54.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.040][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-02 16:01:54.041][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:01:54.042][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:01:54.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:54.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:54.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:54.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:54.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:54.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:54.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:01:54.054][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:54.057][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:54.060][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-02 16:01:54.061][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:54.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:54.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:54.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:54.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:54.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:54.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:54.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:54.073][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2025-08-02 16:01:54.074][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:54.075][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:54.079][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml.
biodb.DEBUG[2025-08-02 16:01:54.080][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:54.082][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:54.083][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:54.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:54.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:54.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:54.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:54.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:54.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:54.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:54.094][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.095][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.097][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.106][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:54.107][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:54.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.108][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.109][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:54.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:54.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.113][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:54.114][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:54.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:54.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:54.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.120][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:54.121][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:54.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.123][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:54.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:54.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.128][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:54.129][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:54.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.131][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:54.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:54.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.135][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:54.136][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:54.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.138][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.139][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:54.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:54.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.143][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:54.144][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.145][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.146][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:54.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.150][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.151][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.153][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.157][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:54.158][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:54.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.160][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.161][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:54.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:54.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.165][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:54.166][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:54.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.169][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:54.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:54.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.172][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:54.173][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:54.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.175][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.176][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:54.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:54.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:54.216][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2025-08-02 16:01:54.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:54.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:54.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:54.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:54.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:54.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:54.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:54.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:54.237][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2025-08-02 16:01:54.238][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:54.240][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:54.244][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml.
biodb.DEBUG[2025-08-02 16:01:54.245][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:54.246][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:54.247][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:54.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:54.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:54.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:54.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:54.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:54.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:54.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:54.259][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.260][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.261][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.266][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:54.267][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:54.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.269][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.270][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:54.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:54.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.274][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:54.275][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:54.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.277][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.278][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:54.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:54.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.281][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:54.282][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:54.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.284][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:54.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:54.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.289][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:54.290][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:54.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.292][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:54.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:54.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.297][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:54.298][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:54.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.299][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.300][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:54.301][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.303][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.304][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:54.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.308][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.309][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.316][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:54.316][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:54.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.318][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:54.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:54.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.323][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:54.324][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:54.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.326][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.327][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:54.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:54.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.331][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:54.332][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:54.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:54.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:54.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:54.379][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2025-08-02 16:01:54.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:54.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:54.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:54.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:54.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:54.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:54.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:54.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:54.400][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2025-08-02 16:01:54.401][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:54.402][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:54.406][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml.
biodb.DEBUG[2025-08-02 16:01:54.407][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:54.408][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:54.409][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:54.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:54.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:54.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:54.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:54.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:54.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:54.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:54.421][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.422][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.423][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.428][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:54.429][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:54.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.431][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.432][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:54.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:54.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.436][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:54.437][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:54.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.438][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:54.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:54.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.443][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:54.444][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:54.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.446][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:54.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:54.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.451][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:54.451][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:54.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.453][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:54.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:54.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.458][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:54.459][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:54.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.461][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.462][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:54.463][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.466][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:54.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.469][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.470][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.472][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.477][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:54.478][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:54.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.479][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.481][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:54.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:54.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.484][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:54.485][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:54.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.488][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:54.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:54.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.492][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:54.493][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:54.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.495][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.496][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:54.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:54.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:54.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:54.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:54.536][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2025-08-02 16:01:54.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:54.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:54.548][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:01:54.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:54.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:54.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:54.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:54.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:54.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:54.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:54.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.567][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.567][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:54.568][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:54.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:54.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.571][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.572][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.574][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.576][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.577][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.579][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.580][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.581][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.583][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.584][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:54.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.596][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-02 16:01:54.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:54.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:54.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:54.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:54.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:54.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:54.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:54.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.613][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.614][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:54.619][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:54.620][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:54.621][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.621][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.622][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.624][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.628][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.629][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.629][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.630][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.631][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.633][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.634][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:54.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.646][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-08-02 16:01:54.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:54.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:54.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:54.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:54.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:54.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:54.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:54.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.663][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.664][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:54.665][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:54.666][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:54.666][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.667][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.670][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.672][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.674][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.675][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.677][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.679][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.680][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:54.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.692][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-08-02 16:01:54.693][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:01:54.694][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-02 16:01:54.701][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-02 16:01:54.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-02 16:01:54.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.704][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-02 16:01:54.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-02 16:01:54.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.708][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-02 16:01:54.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-02 16:01:54.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-02 16:01:54.714][biodb::testThat]
biodb.INFO [2025-08-02 16:01:54.715][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-08-02 16:01:54.716][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-02 16:01:54.717][biodb::testThat]
biodb.TRACE[2025-08-02 16:01:54.719][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-02 16:01:54.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-02 16:01:54.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.723][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-02 16:01:54.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-02 16:01:54.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.727][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-02 16:01:54.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-02 16:01:54.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:54.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:54.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:54.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:54.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:54.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:54.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:54.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:01:54.787][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:54.789][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:54.791][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-02 16:01:54.792][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:54.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:54.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:54.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:54.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:54.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:54.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:54.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:54.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:01:54.815][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:54.817][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:54.819][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-02 16:01:54.820][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:54.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:54.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:54.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:54.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:54.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:54.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:54.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:54.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:54.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:54.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:54.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:54.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:54.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:54.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:54.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:54.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:54.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:54.862][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:01:54.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:54.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:54.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:54.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:54.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:54.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:54.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:54.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.884][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.885][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:54.886][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:54.887][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:54.888][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.891][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.892][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.893][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.895][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.896][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.896][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.897][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.898][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.900][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.901][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:54.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.913][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-02 16:01:54.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:54.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:54.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:54.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:54.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:54.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:54.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:54.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.931][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:54.932][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:54.933][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:54.934][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.941][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.943][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.944][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.946][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.947][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:54.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.959][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-02 16:01:54.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:54.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:54.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:54.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:54.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:54.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:54.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:54.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.978][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:54.979][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:54.979][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:54.980][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.985][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.986][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.987][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.989][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:54.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.991][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.993][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.994][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:54.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:54.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:54.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:54.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.006][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-02 16:01:55.007][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:01:55.008][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:01:55.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:01:55.020][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:55.023][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:55.025][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-02 16:01:55.026][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:55.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:55.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:55.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:55.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:01:55.069][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:55.071][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:55.074][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-02 16:01:55.075][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:55.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:55.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:55.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:55.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:55.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:55.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:55.142][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:01:55.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:55.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.159][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:55.160][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:55.161][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:55.162][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:55.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:55.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.166][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.167][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.168][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.170][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.171][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:55.172][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:55.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.173][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.175][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.176][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:55.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.188][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-02 16:01:55.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:55.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.205][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:55.206][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:55.207][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:55.208][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:55.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:55.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.212][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.214][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.216][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.217][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:55.218][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:55.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.222][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:55.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.234][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-02 16:01:55.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:55.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.252][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:55.252][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:55.253][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:55.254][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:55.255][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:55.256][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.257][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.259][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.260][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.261][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.262][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:55.264][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:55.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.268][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.269][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:55.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.281][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-02 16:01:55.282][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:01:55.283][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:01:55.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:01:55.295][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:55.297][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:55.299][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-02 16:01:55.300][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:55.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:55.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:55.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:55.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:55.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:55.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:01:55.363][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:55.365][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:55.371][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/9e2d7a19ee9cad83d9ec98e38ff7728c.content.
sched.DEBUG[2025-08-02 16:01:55.372][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:55.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:55.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:55.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:55.410][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2025-08-02 16:01:55.411][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:55.412][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:55.417][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml.
biodb.DEBUG[2025-08-02 16:01:55.418][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:55.419][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:55.420][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:55.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:55.432][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.433][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.434][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.439][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:55.440][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:55.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.442][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.443][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:55.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:55.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.447][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:55.448][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:55.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.449][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:55.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:55.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.454][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:55.455][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:55.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.457][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:55.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:55.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.462][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:55.463][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:55.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:55.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:55.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.469][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:55.470][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:55.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.472][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.473][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:55.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:55.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.477][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:55.478][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.479][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.480][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:55.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.484][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:55.485][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:55.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:55.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:55.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.491][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:55.492][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:55.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.494][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:55.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:55.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.499][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:55.500][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:55.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.503][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:55.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:55.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.507][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:55.508][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:55.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.509][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:55.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:55.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:55.551][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2025-08-02 16:01:55.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:55.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:55.572][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2025-08-02 16:01:55.573][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:55.574][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:55.579][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml.
biodb.DEBUG[2025-08-02 16:01:55.580][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:55.581][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:55.582][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:55.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:55.594][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.595][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.597][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.602][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:55.603][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:55.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.604][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.605][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:55.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:55.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.609][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:55.610][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:55.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.612][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.613][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:55.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:55.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.617][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:55.618][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:55.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.620][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:55.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:55.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.624][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:55.625][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:55.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.627][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:55.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:55.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.632][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:55.633][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:55.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.636][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:55.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:55.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.640][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:55.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.643][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.644][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:55.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.651][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:55.652][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:55.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.654][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:55.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:55.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.659][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:55.660][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:55.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.661][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:55.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:55.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.666][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:55.667][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:55.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.669][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.670][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:55.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:55.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.674][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:55.675][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:55.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.676][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:55.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:55.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:55.717][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2025-08-02 16:01:55.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:55.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:55.738][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2025-08-02 16:01:55.739][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:55.740][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:55.745][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml.
biodb.DEBUG[2025-08-02 16:01:55.746][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:55.747][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:55.748][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:55.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:55.759][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.760][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.762][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.767][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:55.768][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:55.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.770][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.771][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:55.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:55.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.774][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:55.775][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:55.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.778][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:55.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:55.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.782][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:55.783][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:55.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.785][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:55.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:55.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.790][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:55.790][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:55.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:55.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:55.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.797][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:55.798][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:55.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.800][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.801][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:55.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:55.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.805][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:55.806][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.807][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.808][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:55.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.812][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:55.813][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:55.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.815][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:55.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:55.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.820][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:55.821][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:55.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.822][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.824][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:55.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:55.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.827][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:55.828][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:55.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.830][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.831][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:55.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:55.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.835][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:55.836][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:55.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.838][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:55.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:55.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:55.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:55.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:55.879][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2025-08-02 16:01:55.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:55.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:55.891][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:01:55.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:55.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.913][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:55.914][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:55.915][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:55.916][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:55.917][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:55.918][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.919][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.920][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.921][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.922][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.924][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.925][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:55.926][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:55.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.927][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.929][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.930][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:55.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.942][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-02 16:01:55.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:55.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.959][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:55.960][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:55.961][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:55.962][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:55.963][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:55.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.966][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.967][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.968][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.970][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.971][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:55.972][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:55.973][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.974][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.975][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.976][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:55.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:55.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:55.988][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2025-08-02 16:01:55.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:55.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:55.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:55.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:55.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:55.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:55.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:55.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:55.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.006][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.007][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:56.007][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:56.008][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:56.009][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.010][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.011][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.013][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.015][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.016][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.018][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.022][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.023][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:56.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.035][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2025-08-02 16:01:56.036][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:01:56.037][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-02 16:01:56.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:56.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:01:56.101][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:56.104][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:56.105][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-02 16:01:56.106][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-02 16:01:56.109][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:56.111][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:56.113][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-02 16:01:56.114][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:56.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:56.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:56.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:56.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:56.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:56.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:56.181][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:01:56.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:56.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.199][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.200][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:56.201][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:56.202][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:56.202][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.206][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.210][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.211][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.211][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.212][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.213][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.215][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.216][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:56.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.228][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-02 16:01:56.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:56.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.245][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.246][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:56.247][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:56.248][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:56.249][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.250][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.251][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.252][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.254][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.256][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.258][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.259][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.261][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.262][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:56.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.274][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-02 16:01:56.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:56.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.292][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.293][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:56.294][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:56.294][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:56.295][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.297][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.299][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.300][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.303][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.304][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.305][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.309][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:56.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.321][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-02 16:01:56.322][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:01:56.323][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:01:56.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:01:56.336][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:56.338][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:56.343][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/ca8f292aaf9d7e19110a4d4f8e8081db.content.
sched.DEBUG[2025-08-02 16:01:56.344][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:56.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:56.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:56.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:56.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:56.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:56.396][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2025-08-02 16:01:56.397][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:56.398][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:56.403][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml.
biodb.DEBUG[2025-08-02 16:01:56.404][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:56.405][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:56.406][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:56.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:56.422][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:56.423][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:56.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.424][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:56.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:56.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.429][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:56.430][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:56.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.432][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.433][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:56.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:56.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.437][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:56.438][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:56.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.439][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.441][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:56.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:56.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.444][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:56.445][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:56.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.447][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:56.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:56.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.452][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:56.453][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:56.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.454][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:56.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:56.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.459][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:56.460][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:56.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.462][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.463][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:56.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:56.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.467][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:56.468][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:56.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.469][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.470][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:56.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:56.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.474][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.475][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.481][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:56.482][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:56.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:56.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:56.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.489][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:56.490][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:56.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.492][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.493][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:56.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:56.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.496][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:56.497][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:56.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.499][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.500][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:56.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:56.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:56.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:56.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:56.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:56.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:56.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:56.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:56.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:56.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:56.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:56.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:56.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:56.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:56.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:56.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:56.540][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2025-08-02 16:01:56.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:56.552][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:01:56.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:56.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.571][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.571][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:56.572][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:56.573][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:56.574][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.576][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.578][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.581][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.582][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.583][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.584][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.585][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.587][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.588][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:56.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.600][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-02 16:01:56.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:56.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.617][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.618][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:56.619][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:56.620][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:56.621][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.622][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.623][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.625][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.628][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.629][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.630][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.631][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.632][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.634][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.634][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:56.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.647][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-02 16:01:56.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:56.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.669][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:56.670][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:56.671][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:56.672][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.673][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.674][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.675][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.677][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.679][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.680][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.681][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:56.681][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.682][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.684][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.685][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:56.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.697][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2025-08-02 16:01:56.698][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:01:56.699][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:01:56.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:01:56.711][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:56.713][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:56.717][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-02 16:01:56.718][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:56.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:56.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:56.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:56.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:56.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:56.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:56.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:56.789][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2025-08-02 16:01:56.790][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:56.791][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:56.795][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml.
biodb.DEBUG[2025-08-02 16:01:56.796][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:56.797][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:56.798][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:56.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:56.810][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:56.811][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:56.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.813][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:56.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:56.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.817][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:56.818][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:56.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.820][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.821][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:56.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:56.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.825][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:56.826][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:56.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.828][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:56.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:56.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.833][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:56.834][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:56.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.835][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:56.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:56.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.840][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:56.841][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:56.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.843][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:56.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:56.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.848][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:56.849][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:56.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.850][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.852][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:56.853][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:56.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.854][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.855][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:56.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:56.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.859][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.860][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.862][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.867][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:56.868][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:56.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.869][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.871][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:56.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:56.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.874][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:56.875][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:56.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.877][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.878][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:56.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:56.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.882][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:56.883][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:56.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.885][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:56.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:56.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:56.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:56.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:56.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:56.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:56.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:56.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:56.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:56.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:56.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:56.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:56.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:56.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:56.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:56.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:56.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:56.935][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2025-08-02 16:01:56.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:56.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:56.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:56.956][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2025-08-02 16:01:56.957][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:56.958][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:56.963][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml.
biodb.DEBUG[2025-08-02 16:01:56.964][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:56.965][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:56.966][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:56.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:56.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:56.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:56.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:56.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:56.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:56.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:56.978][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:56.979][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:56.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.981][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:56.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:56.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.986][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:56.987][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:56.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.988][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.990][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:56.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:56.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.993][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:56.994][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:56.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:56.996][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:56.997][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:56.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:56.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.001][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:57.002][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:57.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.003][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:57.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:57.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.008][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.009][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.011][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.016][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:57.017][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:57.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.019][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.020][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:57.021][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:57.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.022][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.023][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:57.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:57.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.027][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.028][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.030][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.035][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:57.036][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:57.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.037][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:57.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:57.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.042][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:57.043][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:57.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.045][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.046][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:57.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:57.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.050][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:57.051][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:57.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.052][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.054][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:57.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:57.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:57.094][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2025-08-02 16:01:57.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:57.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:57.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:57.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:57.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:57.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:57.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:57.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:57.115][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2025-08-02 16:01:57.116][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:57.117][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:57.122][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml.
biodb.DEBUG[2025-08-02 16:01:57.123][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:57.124][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:57.125][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:57.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:57.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:57.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:57.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:57.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:57.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:57.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:57.137][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.138][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.140][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.144][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:57.145][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:57.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.147][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.148][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:57.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:57.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.152][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:57.153][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:57.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.155][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.156][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:57.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:57.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.160][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:57.161][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:57.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.162][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:57.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:57.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.167][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.168][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.170][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.175][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:57.176][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:57.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.177][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.178][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:57.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:57.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.182][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:57.183][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:57.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.185][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.186][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:57.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:57.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.194][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.195][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.197][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.202][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:57.203][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:57.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.205][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:57.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:57.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.210][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:57.211][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:57.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.212][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.213][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:57.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:57.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.217][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:57.218][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:57.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.220][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.221][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:57.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:57.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:57.261][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2025-08-02 16:01:57.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:57.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:57.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:57.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:57.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:57.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:57.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:57.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:57.282][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2025-08-02 16:01:57.282][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:57.284][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:57.288][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml.
biodb.DEBUG[2025-08-02 16:01:57.289][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:57.290][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:57.291][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:57.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:57.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:57.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:57.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:57.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:57.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:57.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:57.303][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.304][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.305][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.310][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:57.311][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:57.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.313][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.314][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:57.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:57.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.318][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:57.319][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:57.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.320][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:57.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:57.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.325][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:57.326][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:57.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.328][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:57.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:57.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.333][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.334][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.336][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.340][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:57.341][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:57.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.343][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.344][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:57.345][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:57.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.347][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.348][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:57.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:57.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.352][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.353][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.354][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.359][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:57.360][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:57.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.362][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.363][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:57.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:57.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.367][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:57.368][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:57.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.370][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.371][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:57.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:57.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.375][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:57.376][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:57.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.377][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.378][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:57.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:57.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:57.419][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2025-08-02 16:01:57.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:57.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:57.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:57.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:57.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:57.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:57.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:57.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:57.440][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2025-08-02 16:01:57.441][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:57.443][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:57.447][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml.
biodb.DEBUG[2025-08-02 16:01:57.448][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:57.449][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:57.450][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:57.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:57.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:57.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:57.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:57.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:57.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:57.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:57.466][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.467][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.469][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.474][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:57.475][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:57.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.476][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.477][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:57.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:57.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.481][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:57.482][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:57.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:57.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:57.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.489][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:57.490][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:57.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.491][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:57.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:57.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.496][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.497][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.499][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.503][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:57.504][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:57.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.506][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.507][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:57.508][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:57.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.510][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.511][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:57.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:57.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.515][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.516][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.517][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.522][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:57.523][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:57.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.525][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:57.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:57.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.530][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:57.531][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:57.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.533][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.534][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:57.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:57.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.537][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:57.538][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:57.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.540][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:57.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:57.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:57.582][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2025-08-02 16:01:57.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:57.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:57.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:57.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:57.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:57.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:57.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:57.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:57.603][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2025-08-02 16:01:57.604][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:57.605][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:57.609][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml.
biodb.DEBUG[2025-08-02 16:01:57.610][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:57.611][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:57.612][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:57.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:57.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:57.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:57.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:57.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:57.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:57.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:57.624][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.625][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.627][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.632][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:57.633][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:57.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.636][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:57.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:57.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.640][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:57.641][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:57.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.642][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.643][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:57.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:57.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.647][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:57.648][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:57.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.650][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:57.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:57.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.655][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.656][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.658][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.662][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:57.663][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:57.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.666][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:57.667][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:57.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.669][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.670][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:57.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:57.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.674][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.675][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.677][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.682][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:57.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:57.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.684][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:57.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:57.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.689][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:57.690][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:57.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.692][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.693][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:57.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:57.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.697][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:57.698][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:57.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.700][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:57.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:57.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:57.746][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2025-08-02 16:01:57.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:57.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:57.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:57.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:57.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:57.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:57.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:57.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:57.767][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2025-08-02 16:01:57.768][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:57.769][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:57.773][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml.
biodb.DEBUG[2025-08-02 16:01:57.774][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:57.775][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:57.776][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:57.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:57.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:57.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:57.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:57.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:57.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:57.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:57.788][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.789][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.791][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.795][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:57.796][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:57.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.798][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.799][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:57.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:57.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.803][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:57.804][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:57.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.806][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.807][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:57.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:57.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.811][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:57.811][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:57.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.813][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:57.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:57.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.818][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.819][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.821][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:01:57.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.826][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:57.826][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:01:57.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.828][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.829][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:57.830][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:57.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.832][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.833][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:01:57.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:57.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.837][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.838][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.840][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.844][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:57.845][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:57.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.847][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.848][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:57.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:57.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.852][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:57.853][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:57.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.855][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.856][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:01:57.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:01:57.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.860][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:57.861][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:57.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.862][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:01:57.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:01:57.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:57.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:57.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:57.904][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2025-08-02 16:01:57.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:57.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:57.916][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:01:57.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:57.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:57.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:57.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:57.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:57.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:57.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:57.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.935][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:57.935][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:57.936][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:57.937][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:57.938][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:57.939][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.940][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.942][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.945][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.946][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:57.947][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:57.948][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.949][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.951][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.952][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:57.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.964][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-08-02 16:01:57.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:57.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:57.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:57.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:57.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:57.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:57.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:57.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.986][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:57.987][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:57.988][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:57.989][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:57.990][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:57.991][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.993][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.995][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:57.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:57.997][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:57.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:57.999][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.000][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.000][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.002][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.003][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:58.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.015][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2025-08-02 16:01:58.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.033][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:58.034][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:58.035][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:58.036][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.037][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.039][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.040][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.041][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.043][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.044][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.045][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.045][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.046][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.048][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.049][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:58.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.061][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2025-08-02 16:01:58.062][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:01:58.063][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-02 16:01:58.070][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-02 16:01:58.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-02 16:01:58.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.074][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-02 16:01:58.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-02 16:01:58.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.077][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-02 16:01:58.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-02 16:01:58.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-02 16:01:58.083][biodb::testThat]
biodb.INFO [2025-08-02 16:01:58.084][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-08-02 16:01:58.085][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-02 16:01:58.086][biodb::testThat]
biodb.TRACE[2025-08-02 16:01:58.089][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-02 16:01:58.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-02 16:01:58.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.092][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-02 16:01:58.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-02 16:01:58.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.096][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-02 16:01:58.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-02 16:01:58.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:58.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:01:58.157][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:58.160][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:58.162][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-02 16:01:58.162][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:58.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:01:58.185][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:58.187][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:58.189][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-02 16:01:58.190][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:58.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:58.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:58.236][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:01:58.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.254][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.255][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:58.255][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:58.256][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:58.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.261][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.262][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.263][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.264][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.266][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.270][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.270][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:58.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.282][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-02 16:01:58.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.299][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.300][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:58.301][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:58.302][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:58.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.304][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.305][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.306][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.307][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.308][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.310][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.311][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.312][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.313][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.316][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:58.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.328][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-02 16:01:58.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.346][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.347][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:58.348][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:58.349][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:58.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.350][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.351][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.353][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.354][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.355][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.357][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.358][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.359][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.359][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.360][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.362][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.363][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:58.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.375][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-02 16:01:58.376][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:01:58.377][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:01:58.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:01:58.390][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:58.392][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:58.394][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-02 16:01:58.395][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:58.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:58.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:01:58.439][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:58.441][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:58.444][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-02 16:01:58.445][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:58.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:58.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:58.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:58.513][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:01:58.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.532][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:58.533][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:58.533][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:58.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.538][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.541][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.542][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.543][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.547][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.548][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:58.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.560][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-02 16:01:58.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.577][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.578][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:58.579][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:58.580][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:58.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.582][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.584][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.588][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.589][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.590][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.594][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:58.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.606][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-02 16:01:58.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.624][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.625][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:58.626][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:58.626][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:58.627][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.628][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.629][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.631][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.633][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.636][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.636][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.641][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:58.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.653][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-02 16:01:58.654][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:01:58.655][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:01:58.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:01:58.668][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:58.670][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:58.673][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-08-02 16:01:58.673][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:58.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:58.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:58.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:58.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:58.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:58.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:58.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:58.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:01:58.843][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:58.845][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:58.847][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-02 16:01:58.848][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:58.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:58.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:58.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:58.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:58.911][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:01:58.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.929][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.930][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:58.931][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:58.932][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:58.933][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.936][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.940][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.941][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.942][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.945][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.946][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:58.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.959][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-02 16:01:58.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:58.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:58.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:58.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:58.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:58.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:58.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:58.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.977][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:58.978][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:58.979][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:58.980][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.983][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.985][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.987][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.989][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:58.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.995][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:58.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:58.997][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:58.998][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:58.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.010][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-02 16:01:59.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:59.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.029][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:59.030][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:59.030][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:59.031][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.032][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.033][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.035][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.038][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.039][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.040][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.041][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.042][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.044][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.045][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:59.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.057][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-02 16:01:59.057][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:01:59.058][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-02 16:01:59.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:59.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:01:59.132][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:59.135][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:59.136][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-02 16:01:59.137][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-02 16:01:59.140][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:59.142][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:59.144][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-02 16:01:59.145][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:59.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:59.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:59.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:59.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:59.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:59.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:59.209][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:01:59.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:59.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.227][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.228][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:59.229][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:59.230][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:59.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.231][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.232][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.234][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.235][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.236][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.239][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.240][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.241][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.243][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.244][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:59.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.261][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-02 16:01:59.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:59.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.279][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:59.280][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:59.281][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:59.282][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.283][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.285][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.289][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.290][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.291][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.291][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.292][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.294][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.295][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:59.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.307][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-02 16:01:59.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:59.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.325][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:59.326][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:59.327][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:59.328][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.329][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.330][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.331][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.332][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.335][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.336][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.337][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.338][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.339][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.340][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.341][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:59.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.353][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-02 16:01:59.354][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:01:59.355][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:01:59.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:01:59.368][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:59.370][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:59.373][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-08-02 16:01:59.374][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:59.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:59.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:59.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:59.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:59.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:59.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:59.437][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:01:59.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:59.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.456][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.457][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:59.457][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:59.458][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:59.459][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.463][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.464][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.465][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.467][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.468][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.469][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.470][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.472][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.473][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:59.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.485][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-02 16:01:59.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:59.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.508][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.509][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:59.509][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:59.510][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:59.511][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.515][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.517][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.518][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.519][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.520][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.521][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.524][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.525][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:59.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.537][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-02 16:01:59.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:59.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.554][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.555][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:59.556][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:59.556][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:59.557][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.558][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.559][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.561][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.565][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.566][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.570][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.571][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:59.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.583][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-02 16:01:59.584][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:01:59.585][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:01:59.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:01:59.597][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:59.599][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:59.603][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-02 16:01:59.604][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:59.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:59.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:59.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:59.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:59.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:59.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:59.668][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:01:59.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:59.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.686][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.687][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:59.688][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:59.689][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:59.690][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.692][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.694][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.695][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.696][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.697][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.698][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.699][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.700][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.701][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.703][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.704][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:59.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.716][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-02 16:01:59.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:59.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.734][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.734][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:59.735][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:59.736][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:59.737][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.738][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.739][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.741][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.742][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.743][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.744][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.745][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.746][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.747][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.750][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.751][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:59.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.768][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-08-02 16:01:59.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:59.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.785][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.786][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:01:59.787][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:01:59.788][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:01:59.789][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.793][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.794][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.796][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.797][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.797][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:01:59.798][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.799][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.801][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.802][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:01:59.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:01:59.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.814][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-08-02 16:01:59.815][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:01:59.816][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-02 16:01:59.831][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-02 16:01:59.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-02 16:01:59.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.835][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-02 16:01:59.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-02 16:01:59.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.838][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-02 16:01:59.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-02 16:01:59.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.844][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:01:59.845][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:01:59.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.847][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.848][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.849][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:01:59.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.850][ef$get] fields variable is a list.
biodb.INFO [2025-08-02 16:01:59.852][biodb::testThat]
biodb.INFO [2025-08-02 16:01:59.853][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-08-02 16:01:59.854][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-02 16:01:59.855][biodb::testThat]
biodb.TRACE[2025-08-02 16:01:59.857][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-02 16:01:59.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-02 16:01:59.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.861][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-02 16:01:59.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-02 16:01:59.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.864][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-02 16:01:59.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-02 16:01:59.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:01:59.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:01:59.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:01:59.925][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:01:59.928][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:01:59.934][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/b616afd034ed5d04cbb32f1e92c778e7.content.
sched.DEBUG[2025-08-02 16:01:59.935][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:01:59.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:01:59.949][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2025-08-02 16:01:59.950][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:01:59.951][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:01:59.955][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml.
biodb.DEBUG[2025-08-02 16:01:59.956][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:01:59.957][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:01:59.958][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:01:59.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:01:59.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:01:59.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:01:59.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:01:59.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:01:59.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:01:59.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:01:59.970][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:59.971][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:59.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.972][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:01:59.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:01:59.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.977][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:59.978][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:59.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.980][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.981][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:01:59.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:01:59.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.985][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:59.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:59.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.988][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:01:59.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:01:59.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.993][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:59.994][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:59.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:01:59.996][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:01:59.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:01:59.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:01:59.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.001][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.002][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.003][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.008][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:00.009][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:00.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.011][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.012][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:00.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:00.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.016][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:00.022][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.024][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.025][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:00.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.029][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:00.030][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:00.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:00.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:00.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.037][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:00.038][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:00.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.040][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:00.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:00.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.045][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:00.046][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:00.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.048][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.049][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:00.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:00.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.053][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:00.054][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:00.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.055][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.056][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:00.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:00.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:00.097][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2025-08-02 16:02:00.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:00.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:00.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:00.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:00.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:00.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:00.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:00.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:00.118][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2025-08-02 16:02:00.119][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:00.120][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:00.124][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml.
biodb.DEBUG[2025-08-02 16:02:00.125][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:00.126][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:00.127][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:00.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:00.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:00.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:00.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:00.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:00.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:00.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:00.139][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.142][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.146][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:00.147][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:00.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.149][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.150][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:00.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:00.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.154][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:00.155][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:00.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.157][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.158][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:00.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:00.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.162][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:00.163][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:00.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.164][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:00.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:00.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.169][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.170][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.177][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:00.178][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:00.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.180][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.181][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:00.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:00.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.184][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:00.185][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.187][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.188][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:00.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.192][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:00.193][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:00.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.195][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:00.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:00.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.200][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:00.201][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:00.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.202][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.204][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:00.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:00.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.207][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:00.208][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:00.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.210][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.211][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:00.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:00.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.215][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:00.216][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:00.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.218][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:00.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:00.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:00.260][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2025-08-02 16:02:00.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:00.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:00.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:00.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:00.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:00.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:00.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:00.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:00.286][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2025-08-02 16:02:00.287][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:00.288][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:00.293][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml.
biodb.DEBUG[2025-08-02 16:02:00.294][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:00.295][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:00.296][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:00.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:00.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:00.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:00.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:00.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:00.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:00.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:00.308][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.309][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.310][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.315][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:00.316][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:00.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.318][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.319][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:00.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:00.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.323][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:00.324][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:00.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.325][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.326][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:00.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:00.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.330][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:00.331][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:00.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:00.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:00.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.338][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.339][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.340][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.345][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:00.346][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:00.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.348][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.349][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:00.350][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.353][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:00.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.356][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:00.357][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:00.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.359][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:00.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:00.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.364][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:00.365][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:00.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.366][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.368][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:00.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:00.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.371][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:00.372][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:00.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.374][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.375][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:00.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:00.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.379][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:00.380][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:00.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.382][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:00.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:00.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:00.423][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2025-08-02 16:02:00.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:00.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:00.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:00.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:00.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:00.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:00.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:00.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:00.444][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2025-08-02 16:02:00.445][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:00.447][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:00.450][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml.
biodb.DEBUG[2025-08-02 16:02:00.451][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:00.452][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:00.453][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:00.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:00.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:00.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:00.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:00.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:00.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:00.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:00.465][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.466][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.468][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.473][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:00.474][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:00.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.476][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.477][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:00.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:00.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.481][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:00.482][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:00.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.483][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:00.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:00.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.488][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:00.489][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:00.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.491][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:00.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:00.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.496][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.497][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.499][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.504][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:00.505][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:00.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.507][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.508][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:00.509][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.510][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.512][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:00.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.515][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:00.516][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:00.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.518][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:00.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:00.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.523][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:00.524][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:00.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.526][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:00.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:00.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.531][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:00.532][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:00.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.533][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.539][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:00.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:00.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.543][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:00.544][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:00.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.546][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:00.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:00.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:00.587][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2025-08-02 16:02:00.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:00.599][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:00.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:00.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:00.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:00.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:00.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:00.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:00.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:00.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.617][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:00.617][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:00.618][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:00.619][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:00.620][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:00.621][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.622][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.624][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.627][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.628][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:00.629][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:00.630][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.631][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.633][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.634][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:00.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.646][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-02 16:02:00.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:00.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:00.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:00.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:00.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:00.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:00.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:00.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:00.664][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:00.665][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:00.666][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:00.667][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:00.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.671][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.672][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.673][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.674][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.675][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:00.676][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:00.677][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.678][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.680][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.681][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:00.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.693][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-08-02 16:02:00.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:00.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:00.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:00.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:00.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:00.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:00.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:00.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.711][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:00.712][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:00.713][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:00.714][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:00.714][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:00.715][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.716][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.718][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.719][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.720][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.722][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.723][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:00.724][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:00.725][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.726][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.727][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.728][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:00.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.741][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-08-02 16:02:00.741][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:00.742][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:00.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:00.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:00.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:00.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:00.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:00.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:00.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:00.755][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:00.758][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:00.763][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/4da83335ec00090f05f0a5128074d1f6.content.
sched.DEBUG[2025-08-02 16:02:00.764][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:00.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:00.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:00.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:00.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:00.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:00.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:00.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:00.777][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2025-08-02 16:02:00.778][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:00.779][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:00.783][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml.
biodb.DEBUG[2025-08-02 16:02:00.784][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:00.785][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:00.786][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:00.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:00.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:00.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:00.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:00.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:00.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:00.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:00.803][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.804][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.806][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.810][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:00.811][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:00.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.813][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.814][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:00.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:00.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.818][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:00.819][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:00.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.821][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.822][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:00.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:00.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.825][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:00.826][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:00.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.828][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:00.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:00.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.836][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.840][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:00.841][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:00.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.843][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.844][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:00.845][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.847][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.848][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:00.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.852][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:00.852][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:00.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.854][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:00.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:00.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.859][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:00.860][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:00.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.862][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:00.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:00.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.866][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:00.867][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:00.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.869][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.870][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:00.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:00.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.874][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:00.875][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:00.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.877][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:00.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:00.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:00.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:00.918][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2025-08-02 16:02:00.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:00.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:00.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:00.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:00.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:00.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:00.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:00.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:00.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:00.939][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2025-08-02 16:02:00.940][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:00.942][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:00.946][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml.
biodb.DEBUG[2025-08-02 16:02:00.947][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:00.948][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:00.949][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:00.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:00.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:00.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:00.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:00.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:00.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:00.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:00.961][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.962][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.964][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:00.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:00.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.969][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:00.970][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:00.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.972][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.973][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:00.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:00.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.976][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:00.977][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:00.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.979][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:00.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:00.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.984][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:00.985][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:00.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.987][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:00.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:00.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.992][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.993][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.994][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:00.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:00.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:00.999][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:01.000][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:01.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.002][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.003][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:01.004][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.006][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.007][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:01.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.011][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.012][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.013][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.018][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:01.019][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:01.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.021][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:01.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:01.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.026][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:01.027][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:01.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.029][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.030][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:01.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:01.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.033][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:01.034][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:01.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.036][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:01.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:01.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:01.082][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2025-08-02 16:02:01.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:01.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:01.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:01.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:01.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:01.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:01.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:01.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:01.103][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2025-08-02 16:02:01.104][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:01.106][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:01.109][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml.
biodb.DEBUG[2025-08-02 16:02:01.110][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:01.111][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:01.112][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:01.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:01.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:01.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:01.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:01.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:01.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:01.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:01.124][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.125][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.126][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.131][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:01.132][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:01.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.134][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.135][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:01.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:01.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.139][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:01.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:01.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.141][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.143][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:01.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:01.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.146][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:01.147][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:01.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.149][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:01.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:01.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.154][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:01.155][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:01.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.156][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:01.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:01.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.161][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:01.162][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:01.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.164][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.165][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:01.166][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.169][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:01.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.173][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.174][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.175][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.180][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:01.181][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:01.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.183][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:01.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:01.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.188][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:01.189][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:01.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.191][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.192][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:01.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:01.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.195][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:01.196][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:01.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.198][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:01.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:01.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:01.240][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2025-08-02 16:02:01.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:01.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:01.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:01.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:01.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:01.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:01.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:01.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:01.261][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2025-08-02 16:02:01.262][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:01.264][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:01.268][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml.
biodb.DEBUG[2025-08-02 16:02:01.269][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:01.270][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:01.271][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:01.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:01.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:01.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:01.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:01.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:01.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:01.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:01.283][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.284][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.286][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.291][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:01.292][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:01.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.294][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.295][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:01.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:01.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.299][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:01.300][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:01.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.301][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.302][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:01.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:01.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.306][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:01.312][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:01.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.314][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:01.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:01.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.319][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:01.320][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:01.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.321][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:01.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:01.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.326][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:01.327][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:01.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.329][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.330][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:01.331][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.334][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:01.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.337][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.338][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.340][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.345][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:01.346][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:01.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.348][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:01.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:01.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.353][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:01.354][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:01.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.355][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.356][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:01.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:01.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.360][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:01.361][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:01.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.363][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:01.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:01.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:01.404][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2025-08-02 16:02:01.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:01.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:01.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:01.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:01.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:01.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:01.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:01.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:01.425][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2025-08-02 16:02:01.426][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:01.428][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:01.432][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml.
biodb.DEBUG[2025-08-02 16:02:01.433][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:01.434][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:01.435][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:01.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:01.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:01.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:01.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:01.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:01.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:01.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:01.447][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.448][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.455][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:01.456][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:01.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.457][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.459][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:01.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:01.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.462][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:01.463][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:01.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.465][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.466][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:01.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:01.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.470][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:01.471][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:01.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:01.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:01.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.478][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:01.479][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:01.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:01.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:01.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.485][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:01.486][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:01.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.488][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.489][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:01.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:01.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.493][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:01.494][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.496][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.497][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:01.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.501][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.502][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.503][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.508][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:01.509][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:01.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.511][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:01.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:01.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.516][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:01.517][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:01.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.519][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.520][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:01.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:01.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.524][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:01.525][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:01.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.526][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.528][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:01.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:01.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:01.573][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2025-08-02 16:02:01.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:01.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:01.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:01.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:01.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:01.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:01.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:01.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:01.594][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2025-08-02 16:02:01.595][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:01.596][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:01.600][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml.
biodb.DEBUG[2025-08-02 16:02:01.601][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:01.602][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:01.603][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:01.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:01.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:01.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:01.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:01.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:01.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:01.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:01.615][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.616][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.618][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.623][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:01.623][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:01.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.625][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.626][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:01.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:01.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.630][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:01.631][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:01.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.633][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.634][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:01.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:01.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.637][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:01.638][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:01.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:01.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:01.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.645][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:01.646][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:01.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.648][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:01.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:01.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.652][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:01.653][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:01.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.655][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.656][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:01.657][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.659][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.660][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:01.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.664][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.664][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.666][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.671][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:01.672][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:01.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.674][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:01.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:01.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.678][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:01.679][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:01.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.681][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.682][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:01.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:01.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.686][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:01.687][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:01.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.689][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:01.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:01.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:01.730][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2025-08-02 16:02:01.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:01.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:01.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:01.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:01.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:01.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:01.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:01.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:01.752][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2025-08-02 16:02:01.753][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:01.754][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:01.759][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml.
biodb.DEBUG[2025-08-02 16:02:01.760][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:01.761][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:01.762][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:01.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:01.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:01.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:01.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:01.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:01.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:01.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:01.774][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.775][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.782][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:01.783][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:01.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.785][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.786][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:01.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:01.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.790][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:01.791][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:01.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.793][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.794][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:01.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:01.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.798][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:01.799][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:01.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.800][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:01.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:01.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.805][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:01.806][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:01.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.808][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:01.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:01.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.813][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:01.814][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:01.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.816][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.817][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:01.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:01.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.821][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:01.826][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.828][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.829][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:01.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.833][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.834][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.836][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:01.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.840][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:01.841][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:01.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.843][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:01.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:01.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.848][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:01.849][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:01.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.851][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.852][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:01.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:01.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.855][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:01.856][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:01.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.858][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.859][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:01.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:01.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:01.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:01.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:01.899][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2025-08-02 16:02:01.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:01.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:01.911][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:01.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:01.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:01.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:01.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:01.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:01.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:01.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:01.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.929][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:01.930][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:01.931][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:01.932][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:01.933][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:01.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.936][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.940][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.941][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:01.942][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:01.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.945][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.946][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:01.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.959][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-08-02 16:02:01.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:01.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:01.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:01.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:01.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:01.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:01.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:01.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:01.977][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:01.978][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:01.979][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:01.980][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:01.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.985][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.986][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.987][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:01.989][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:01.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.991][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.993][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.994][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:01.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:01.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:01.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:01.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.006][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-08-02 16:02:02.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:02.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:02.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:02.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:02.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:02.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:02.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:02.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.024][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:02.025][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:02.026][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:02.027][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:02.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:02.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.031][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.032][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.033][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.035][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.036][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:02.037][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:02.038][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.039][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.041][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.041][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:02.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.054][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-08-02 16:02:02.055][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:02.056][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:02.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:02.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:02.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:02.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:02.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:02.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:02.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:02.068][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:02.071][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:02.073][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d4eeadefe2fd6c7a45a5c47263c29105.content.
sched.DEBUG[2025-08-02 16:02:02.078][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:02.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:02.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:02.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:02.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:02.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:02.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:02.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:02.089][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2025-08-02 16:02:02.090][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:02.092][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:02.095][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml.
biodb.DEBUG[2025-08-02 16:02:02.096][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:02.097][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:02.098][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:02.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:02.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:02.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:02.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:02.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:02.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:02.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:02.109][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.110][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.112][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.117][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:02.118][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:02.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.119][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.121][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:02.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:02.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.124][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:02.125][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:02.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.127][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.128][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:02.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:02.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.132][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:02.133][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:02.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.134][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:02.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:02.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.139][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:02.140][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:02.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.142][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:02.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:02.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.146][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:02.147][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:02.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.149][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.150][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:02.151][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.153][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.154][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:02.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.158][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:02.159][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:02.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.160][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:02.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:02.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.165][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:02.166][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:02.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.169][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:02.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:02.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.173][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:02.174][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:02.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.175][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.176][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:02.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:02.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.180][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:02.181][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:02.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.183][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:02.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:02.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:02.224][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2025-08-02 16:02:02.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:02.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:02.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:02.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:02.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:02.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:02.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:02.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:02.246][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2025-08-02 16:02:02.247][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:02.248][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:02.251][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml.
biodb.DEBUG[2025-08-02 16:02:02.252][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:02.253][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:02.254][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:02.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:02.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:02.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:02.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:02.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:02.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:02.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:02.266][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.267][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.269][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.273][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:02.274][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:02.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.276][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.277][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:02.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:02.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.281][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:02.282][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:02.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.284][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.285][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:02.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:02.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.289][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:02.290][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:02.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.292][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:02.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:02.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.296][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:02.297][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:02.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.299][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:02.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:02.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.304][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:02.305][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:02.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.307][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.308][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:02.309][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.312][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:02.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.315][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:02.316][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:02.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.318][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:02.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:02.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.323][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:02.324][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:02.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.326][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:02.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:02.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.351][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:02.352][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:02.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.354][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.355][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:02.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:02.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.359][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:02.360][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:02.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.362][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:02.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:02.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:02.403][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2025-08-02 16:02:02.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:02:02.416][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:02.418][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:02.420][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8a1fe476d9f07138803c04b6da6259b3.content.
sched.DEBUG[2025-08-02 16:02:02.421][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:02.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:02.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:02.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:02.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:02.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:02.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:02.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:02.433][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2025-08-02 16:02:02.434][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:02.435][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:02.439][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml.
biodb.DEBUG[2025-08-02 16:02:02.440][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:02.441][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:02.442][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:02.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:02.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:02.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:02.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:02.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:02.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:02.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:02.454][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.455][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.456][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.461][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:02.462][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:02.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.465][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:02.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:02.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.469][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:02.470][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:02.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.472][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.473][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:02.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:02.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.477][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:02.478][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:02.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:02.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:02.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.485][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:02.486][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:02.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:02.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:02.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.492][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:02.493][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:02.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.495][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.496][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:02.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:02.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.500][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:02.501][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.503][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.504][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:02.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.508][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:02.509][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:02.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.511][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:02.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:02.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.515][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:02.516][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:02.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.518][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:02.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:02.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.523][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:02.524][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:02.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.526][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.527][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:02.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:02.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.531][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:02.532][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:02.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.534][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.535][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:02.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:02.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:02.576][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2025-08-02 16:02:02.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:02.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:02.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:02.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:02.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:02.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:02.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:02.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:02.598][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2025-08-02 16:02:02.599][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:02.600][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:02.604][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml.
biodb.DEBUG[2025-08-02 16:02:02.605][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:02.606][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:02.611][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:02.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:02.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:02.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:02.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:02.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:02.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:02.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:02.623][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.624][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.626][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.631][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:02.632][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:02.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.633][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.635][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:02.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:02.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.638][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:02.639][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:02.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.641][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.642][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:02.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:02.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.646][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:02.647][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:02.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.648][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:02.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:02.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.653][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:02.654][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:02.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.656][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:02.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:02.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.661][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:02.662][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:02.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.663][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.664][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:02.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:02.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.668][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:02.669][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.671][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.672][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:02.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.675][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:02.676][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:02.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.678][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:02.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:02.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.683][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:02.684][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:02.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.686][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:02.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:02.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.691][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:02.692][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:02.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.693][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.694][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:02.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:02.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.698][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:02.699][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:02.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.701][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.702][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:02.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:02.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:02.743][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2025-08-02 16:02:02.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:02.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:02.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:02.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:02.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:02.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:02.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:02.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:02.764][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2025-08-02 16:02:02.765][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:02.766][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:02.770][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml.
biodb.DEBUG[2025-08-02 16:02:02.771][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:02.772][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:02.773][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:02.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:02.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:02.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:02.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:02.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:02.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:02.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:02.785][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.786][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.788][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.793][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:02.794][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:02.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.796][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.797][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:02.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:02.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.800][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:02.801][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:02.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.803][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.804][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:02.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:02.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.808][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:02.809][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:02.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.811][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:02.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:02.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.816][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:02.817][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:02.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.818][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:02.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:02.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.823][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:02.824][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:02.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.826][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.827][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:02.828][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.830][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.831][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:02.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.835][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:02.836][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:02.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.837][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:02.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:02.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.842][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:02.843][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:02.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.845][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.846][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:02.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:02.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.850][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:02.851][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:02.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.853][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.854][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:02.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:02.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.858][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:02.859][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:02.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.860][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:02.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:02.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:02.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:02.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:02.906][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2025-08-02 16:02:02.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:02.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:02.918][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:02.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:02.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:02.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:02.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:02.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:02.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:02.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:02.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.936][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:02.937][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:02.938][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:02.939][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:02.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:02.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.944][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.945][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.947][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.948][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:02.949][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:02.950][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.952][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.953][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:02.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.966][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-08-02 16:02:02.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:02.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:02.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:02.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:02.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:02.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:02.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:02.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.983][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:02.984][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:02.985][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:02.986][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:02.987][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:02.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.991][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.992][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:02.994][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:02.995][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:02.996][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:02.997][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.998][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:02.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.000][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.001][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:03.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.013][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-08-02 16:02:03.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.031][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.032][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:03.033][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:03.033][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:03.034][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.035][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.038][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.039][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.040][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.042][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.043][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.044][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.045][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.045][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.047][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.048][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:03.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.061][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-08-02 16:02:03.061][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:03.062][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:03.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:03.089][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:03.092][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:03.093][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-02 16:02:03.094][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:03.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:02:03.122][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:03.124][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:03.126][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-02 16:02:03.127][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:03.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:03.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:03.169][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:03.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.188][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:03.189][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:03.190][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:03.191][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.194][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.198][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.199][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.200][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.203][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.204][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:03.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-02 16:02:03.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.234][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.235][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:03.236][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:03.237][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:03.238][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.241][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.242][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.245][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.246][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.247][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.250][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.251][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:03.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.264][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-02 16:02:03.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.281][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.282][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:03.283][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:03.284][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:03.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.289][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.291][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.292][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.293][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.294][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.296][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.298][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.299][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:03.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-02 16:02:03.312][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:03.313][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:03.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:03.326][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:03.328][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:03.330][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-02 16:02:03.331][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:03.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:03.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:02:03.379][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:03.381][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:03.384][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-02 16:02:03.385][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:03.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:03.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:03.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:03.448][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:03.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.466][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.467][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:03.468][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:03.469][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:03.470][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.470][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.471][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.474][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.475][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.478][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.479][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.482][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.483][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:03.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.496][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-02 16:02:03.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.513][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.514][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:03.515][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:03.516][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:03.517][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.519][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.520][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.521][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.524][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.525][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.526][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.528][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.530][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.530][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:03.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.543][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-02 16:02:03.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.560][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.561][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:03.562][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:03.563][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:03.564][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.565][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.566][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.568][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.571][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.572][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.573][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.577][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.578][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:03.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.590][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-02 16:02:03.591][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:03.592][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:03.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:03.604][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:03.606][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:03.609][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-08-02 16:02:03.610][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:03.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:03.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:03.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:03.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:03.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:03.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:03.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:03.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:02:03.777][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:03.780][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:03.782][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-02 16:02:03.783][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:03.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:03.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:03.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:03.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:03.846][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:03.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.864][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.865][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:03.866][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:03.867][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:03.868][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.869][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.870][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.872][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.873][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.874][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.875][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.876][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.877][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.878][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.886][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.887][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:03.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.899][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-02 16:02:03.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.916][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.917][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:03.918][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:03.919][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:03.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.921][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.922][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.924][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.927][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.928][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.929][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.930][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.931][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.933][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.933][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:03.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.946][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-02 16:02:03.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:03.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:03.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:03.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:03.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:03.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:03.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:03.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.963][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.964][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:03.965][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:03.966][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:03.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.970][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.971][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.974][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.975][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.976][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:03.977][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.978][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.980][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.980][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:03.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:03.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:03.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:03.993][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-02 16:02:03.994][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:03.995][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:04.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:04.022][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:04.024][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:04.027][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/52d6fe8916b2b36c38f3e0a454a0ac24.content.
sched.DEBUG[2025-08-02 16:02:04.028][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:04.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:04.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:04.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:04.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:04.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:04.080][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2025-08-02 16:02:04.081][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:04.082][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:04.086][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml.
biodb.DEBUG[2025-08-02 16:02:04.087][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:04.089][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:04.090][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:04.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:04.101][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.102][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.104][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.109][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:04.110][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:04.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.112][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.113][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:04.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:04.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.117][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:04.118][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:04.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.119][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.120][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:04.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:04.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.124][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:04.125][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:04.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.127][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:04.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:04.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.132][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:04.133][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:04.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.134][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:04.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:04.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.144][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:04.145][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:04.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.147][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.148][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:04.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:04.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.152][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:04.153][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.155][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.156][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:04.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.160][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:04.161][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:04.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.163][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:04.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:04.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.168][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:04.169][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:04.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.171][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.173][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:04.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:04.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.177][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:04.178][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:04.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.179][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.180][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:04.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:04.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.184][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:04.185][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:04.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.187][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:04.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:04.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:04.229][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2025-08-02 16:02:04.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:04.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:04.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:04.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:04.271][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2025-08-02 16:02:04.272][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:04.273][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:04.277][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml.
biodb.DEBUG[2025-08-02 16:02:04.278][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:04.280][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:04.281][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:04.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:04.292][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.293][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.295][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.300][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:04.301][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:04.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.303][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.304][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:04.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:04.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.308][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:04.309][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:04.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:04.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:04.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.316][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:04.317][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:04.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.318][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:04.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:04.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.323][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:04.324][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:04.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.326][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:04.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:04.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.331][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:04.332][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:04.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.334][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.335][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:04.336][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.338][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.339][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:04.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.343][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:04.344][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:04.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.345][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:04.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:04.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.350][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:04.351][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:04.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.353][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:04.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:04.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.358][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:04.359][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:04.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.362][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:04.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:04.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.366][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:04.367][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:04.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.368][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:04.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:04.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:04.415][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2025-08-02 16:02:04.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:04.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:04.437][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2025-08-02 16:02:04.437][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:04.439][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:04.441][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml.
biodb.DEBUG[2025-08-02 16:02:04.442][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:04.443][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:04.445][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:04.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:04.457][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.458][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.464][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:04.465][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:04.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.467][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.468][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:04.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:04.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.472][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:04.473][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:04.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.476][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:04.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:04.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.479][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:04.480][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:04.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.482][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.483][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:04.484][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:04.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.486][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.487][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:04.488][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:04.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.490][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.491][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:04.492][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.494][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.495][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:04.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.499][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:04.500][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:04.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.501][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:04.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:04.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.506][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:04.507][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:04.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.509][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:04.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:04.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.514][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:04.515][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:04.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.517][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.518][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:04.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:04.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.522][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:04.523][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:04.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.524][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.525][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:04.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:04.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:04.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:04.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:04.566][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2025-08-02 16:02:04.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:04.578][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:04.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:04.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.597][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.598][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:04.598][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:04.599][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:04.600][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.601][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.602][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.604][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.605][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.606][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.608][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.609][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.609][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.610][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.611][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.613][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.614][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:04.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.626][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-02 16:02:04.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:04.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.644][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.645][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:04.646][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:04.647][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:04.648][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.648][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.649][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.656][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.657][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.660][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.661][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.662][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.663][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.666][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.666][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:04.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.679][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-08-02 16:02:04.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:04.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.696][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.697][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:04.698][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:04.699][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:04.700][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.701][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.702][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.703][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.704][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.705][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.707][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.708][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.709][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.710][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.711][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.712][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.713][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:04.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.725][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-08-02 16:02:04.726][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:04.727][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:04.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:04.740][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:04.742][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:04.748][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/a1f794ee7474001c459ff6d20307d75d.content.
sched.DEBUG[2025-08-02 16:02:04.749][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:04.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:04.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:04.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:04.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:04.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:04.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:04.814][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:04.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:04.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.832][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.833][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:04.834][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:04.834][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:04.835][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.836][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.837][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.839][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.840][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.841][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.843][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.844][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.845][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.846][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.848][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.849][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:04.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.861][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-02 16:02:04.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:04.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.879][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.879][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:04.880][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:04.881][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:04.882][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.886][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.889][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.891][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.892][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.893][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.895][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.896][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:04.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.913][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-02 16:02:04.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:04.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.931][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:04.932][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:04.933][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:04.934][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.941][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.943][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:04.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.946][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.947][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:04.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:04.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.959][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-02 16:02:04.960][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:04.961][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:04.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:04.973][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:04.976][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:04.980][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/fee290bbc11906f18fd9eae3d71c81ab.content.
sched.DEBUG[2025-08-02 16:02:04.981][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:04.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:04.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:04.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:04.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:04.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:04.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:04.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:04.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:04.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:04.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:04.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:05.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:05.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:05.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:05.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:05.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:05.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:05.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:05.013][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2025-08-02 16:02:05.014][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:05.015][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:05.018][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml.
biodb.DEBUG[2025-08-02 16:02:05.019][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:05.020][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:05.021][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:05.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:05.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:05.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:05.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:05.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:05.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:05.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:05.033][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.034][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.036][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.041][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:05.042][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:05.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.044][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.045][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:05.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:05.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.048][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:05.049][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:05.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.052][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:05.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:05.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.056][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:05.057][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:05.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.059][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:05.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:05.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.064][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.065][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.066][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.071][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:05.072][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:05.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.074][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.075][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:05.076][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.078][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.079][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:05.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.083][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.084][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.085][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.090][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:05.091][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:05.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.093][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.094][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:05.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:05.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.098][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:05.099][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:05.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.101][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.102][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:05.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:05.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.105][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:05.106][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:05.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.108][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.109][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:05.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:05.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:05.150][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2025-08-02 16:02:05.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:05.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:05.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:05.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:05.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:05.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:05.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:05.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:05.176][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2025-08-02 16:02:05.177][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:05.178][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:05.181][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml.
biodb.DEBUG[2025-08-02 16:02:05.182][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:05.184][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:05.185][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:05.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:05.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:05.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:05.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:05.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:05.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:05.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:05.196][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.197][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.199][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.204][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:05.205][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:05.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.206][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.207][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:05.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:05.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.211][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:05.212][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:05.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.214][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.215][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:05.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:05.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.219][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:05.220][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:05.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:05.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:05.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.226][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.227][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.229][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.234][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:05.234][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:05.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.236][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.237][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:05.238][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.240][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.241][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:05.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.245][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.246][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.247][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.252][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:05.253][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:05.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.255][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:05.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:05.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.260][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:05.261][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:05.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.262][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.264][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:05.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:05.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.267][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:05.268][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:05.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.270][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:05.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:05.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:05.312][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2025-08-02 16:02:05.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:05.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:05.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:05.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:05.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:05.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:05.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:05.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:05.333][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2025-08-02 16:02:05.334][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:05.335][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:05.339][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml.
biodb.DEBUG[2025-08-02 16:02:05.340][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:05.342][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:05.343][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:05.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:05.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:05.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:05.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:05.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:05.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:05.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:05.355][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.356][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.357][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.362][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:05.363][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:05.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.365][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.366][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:05.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:05.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.370][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:05.371][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:05.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.372][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.374][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:05.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:05.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.377][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:05.378][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:05.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.380][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:05.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:05.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.385][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.386][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.388][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.392][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:05.393][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:05.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.395][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.396][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:05.397][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.399][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.400][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:05.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.404][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.405][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.406][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.411][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:05.412][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:05.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.414][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:05.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:05.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.423][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:05.424][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:05.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.426][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.427][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:05.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:05.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.431][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:05.432][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:05.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.434][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.435][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:05.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:05.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:05.475][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2025-08-02 16:02:05.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:05.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:05.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:05.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:05.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:05.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:05.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:05.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:05.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:05.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:05.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:05.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:05.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:05.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:05.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:05.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:05.516][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2025-08-02 16:02:05.517][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:05.518][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:05.523][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml.
biodb.DEBUG[2025-08-02 16:02:05.524][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:05.525][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:05.526][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:05.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:05.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:05.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:05.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:05.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:05.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:05.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:05.538][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.539][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.540][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.545][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:05.546][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:05.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.548][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.549][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:05.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:05.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.553][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:05.554][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:05.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.556][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.557][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:05.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:05.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.561][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:05.562][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:05.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.563][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:05.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:05.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.568][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.569][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.571][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.576][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:05.577][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:05.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.579][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.580][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:05.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:05.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.584][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:05.585][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.586][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.587][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:05.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.591][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.592][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.594][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.599][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:05.600][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:05.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.602][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.603][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:05.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:05.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.607][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:05.608][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:05.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.609][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.610][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:05.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:05.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.614][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:05.615][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:05.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.617][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.618][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:05.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:05.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:05.658][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2025-08-02 16:02:05.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:05.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:05.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:05.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:05.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:05.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:05.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:05.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:05.684][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2025-08-02 16:02:05.685][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:05.687][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:05.691][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml.
biodb.DEBUG[2025-08-02 16:02:05.691][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:05.693][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:05.694][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:05.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:05.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:05.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:05.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:05.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:05.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:05.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:05.705][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.706][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.708][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.713][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:05.713][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:05.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.715][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.716][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:05.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:05.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.720][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:05.721][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:05.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.723][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.724][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:05.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:05.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.728][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:05.728][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:05.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.730][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:05.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:05.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.735][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.736][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.738][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.742][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:05.743][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:05.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.745][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.746][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:05.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:05.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.750][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:05.751][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.753][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.754][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:05.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.757][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.758][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.760][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.765][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:05.766][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:05.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.768][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:05.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:05.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.772][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:05.773][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:05.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.776][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:05.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:05.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.780][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:05.781][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:05.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.783][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:05.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:05.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:05.825][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2025-08-02 16:02:05.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:05.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:05.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:05.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:05.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:05.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:05.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:05.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:05.846][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2025-08-02 16:02:05.847][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:05.848][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:05.852][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml.
biodb.DEBUG[2025-08-02 16:02:05.853][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:05.854][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:05.855][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:05.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:05.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:05.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:05.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:05.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:05.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:05.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:05.866][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.867][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.869][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.874][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:05.875][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:05.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.877][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.878][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:05.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:05.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.882][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:05.883][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:05.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.884][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.886][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:05.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:05.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.889][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:05.890][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:05.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.892][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:05.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:05.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.897][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.898][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.900][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:05.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.904][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:05.905][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:05.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.907][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.908][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:05.909][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.911][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.912][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:05.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.916][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.917][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.919][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:05.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.923][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:05.924][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:05.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.931][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.932][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:05.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:05.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.936][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:05.937][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:05.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.939][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.940][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:05.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:05.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.943][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:05.944][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:05.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.946][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.947][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:05.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:05.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:05.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:05.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:05.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:05.987][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2025-08-02 16:02:05.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:05.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:05.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:05.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:05.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:06.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:06.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:06.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:06.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:06.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:06.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:06.008][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2025-08-02 16:02:06.009][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:06.010][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:06.014][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml.
biodb.DEBUG[2025-08-02 16:02:06.015][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:06.016][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:06.017][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:06.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:06.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:06.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:06.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:06.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:06.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:06.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:06.029][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.030][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.037][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:06.038][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:06.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.039][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.041][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:06.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:06.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.044][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:06.045][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:06.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.047][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.048][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:06.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:06.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.052][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:06.053][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:06.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.055][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:06.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:06.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.059][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.060][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.062][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.067][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:06.068][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:06.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.070][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.071][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:06.072][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.074][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.075][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:06.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.079][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:06.080][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:06.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.081][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:06.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:06.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.086][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:06.087][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:06.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.089][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.090][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:06.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:06.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.094][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:06.095][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:06.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.097][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.098][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:06.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:06.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.102][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:06.102][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:06.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.104][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.105][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:06.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:06.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:06.146][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2025-08-02 16:02:06.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:06.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:06.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:06.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:06.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:06.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:06.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:06.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:06.168][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2025-08-02 16:02:06.168][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:06.170][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:06.174][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml.
biodb.DEBUG[2025-08-02 16:02:06.175][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:06.176][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:06.177][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:06.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:06.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:06.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:06.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:06.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:06.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:06.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:06.194][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.195][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.196][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.201][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:06.202][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:06.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.204][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.205][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:06.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:06.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.209][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:06.210][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:06.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.212][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.213][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:06.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:06.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.216][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:06.217][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:06.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.219][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:06.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:06.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.224][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.225][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.226][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.231][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:06.232][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:06.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.234][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.235][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:06.236][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.239][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:06.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.242][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:06.243][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:06.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.245][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:06.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:06.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.250][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:06.251][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:06.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.252][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.254][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:06.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:06.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.257][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:06.258][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:06.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.260][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.261][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:06.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:06.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.265][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:06.266][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:06.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.268][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.269][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:06.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:06.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:06.309][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2025-08-02 16:02:06.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:06.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:06.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:06.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:06.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:06.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:06.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:06.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:06.331][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2025-08-02 16:02:06.332][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:06.333][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:06.337][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml.
biodb.DEBUG[2025-08-02 16:02:06.338][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:06.339][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:06.340][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:06.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:06.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:06.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:06.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:06.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:06.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:06.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:06.352][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.353][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.354][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.359][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:06.360][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:06.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.362][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.363][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:06.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:06.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.367][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:06.368][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:06.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.370][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.371][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:06.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:06.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.374][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:06.375][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:06.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.377][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:06.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:06.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.382][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.383][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.385][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.389][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:06.390][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:06.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.393][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:06.394][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.396][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.397][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:06.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.401][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:06.402][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:06.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.404][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:06.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:06.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.408][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:06.409][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:06.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.411][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:06.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:06.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.416][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:06.417][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:06.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.419][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.420][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:06.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:06.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.424][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:06.425][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:06.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.426][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:06.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:06.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:06.472][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2025-08-02 16:02:06.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:06.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:06.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:06.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:06.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:06.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:06.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:06.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:06.493][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2025-08-02 16:02:06.494][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:06.496][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:06.499][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml.
biodb.DEBUG[2025-08-02 16:02:06.500][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:06.501][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:06.503][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:06.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:06.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:06.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:06.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:06.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:06.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:06.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:06.514][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.515][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.517][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.522][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:06.523][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:06.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.524][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.525][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:06.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:06.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.529][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:06.530][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:06.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.533][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:06.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:06.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.537][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:06.538][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:06.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.539][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:06.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:06.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.544][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.545][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.547][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.552][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:06.553][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:06.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.555][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.556][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:06.557][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.558][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.560][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:06.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.563][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:06.564][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:06.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.566][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:06.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:06.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.571][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:06.572][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:06.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.574][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:06.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:06.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.579][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:06.580][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:06.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.581][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.583][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:06.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:06.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.586][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:06.587][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:06.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.589][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:06.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:06.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:06.631][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2025-08-02 16:02:06.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:06.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:06.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:06.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:06.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:06.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:06.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:06.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:06.652][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2025-08-02 16:02:06.653][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:06.655][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:06.658][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml.
biodb.DEBUG[2025-08-02 16:02:06.659][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:06.660][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:06.661][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:06.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:06.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:06.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:06.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:06.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:06.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:06.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:06.673][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.674][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.675][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.680][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:06.681][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:06.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.683][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.684][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:06.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:06.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.693][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:06.694][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:06.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.696][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.697][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:06.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:06.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.701][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:06.702][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:06.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.704][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:06.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:06.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.709][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.710][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.712][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.717][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:06.718][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:06.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.720][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.721][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:06.722][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.723][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.724][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:06.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.728][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:06.729][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:06.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.731][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:06.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:06.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.736][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:06.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:06.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.738][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:06.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:06.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.743][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:06.744][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:06.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.746][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.747][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:06.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:06.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.751][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:06.752][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:06.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.753][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.754][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:06.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:06.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:06.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:06.795][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2025-08-02 16:02:06.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:06.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:06.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:06.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:06.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:06.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:06.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:06.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:06.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:06.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:06.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:06.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:06.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:06.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:06.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:06.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:06.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:06.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:06.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:06.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:06.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:06.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:06.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:06.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:06.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:06.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:06.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:06.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:06.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:06.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:06.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:06.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:06.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:06.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:06.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:06.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:06.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:06.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:06.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:06.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:06.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:06.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:06.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:06.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:06.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:06.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:06.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:06.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:06.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:06.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:06.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:06.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:06.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:06.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:06.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:06.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:06.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:06.942][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2025-08-02 16:02:06.943][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:06.944][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:06.948][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml.
biodb.DEBUG[2025-08-02 16:02:06.949][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:06.950][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:06.951][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:06.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:06.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:06.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:06.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:06.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:06.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:06.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:06.962][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.965][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:06.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:06.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.970][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:06.971][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:06.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.973][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.974][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:06.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:06.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.977][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:06.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:06.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.980][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:06.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:06.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.985][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:06.986][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:06.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.988][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:06.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:06.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.992][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.993][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.995][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:06.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:06.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:06.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.000][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:07.001][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:07.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.003][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.004][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:07.005][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.006][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.007][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:07.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.011][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.012][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.014][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.019][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:07.020][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:07.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.021][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:07.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:07.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.026][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:07.027][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:07.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.029][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.030][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:07.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:07.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.034][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:07.035][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:07.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.036][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:07.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:07.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:07.078][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2025-08-02 16:02:07.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:07.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:07.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:07.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:07.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:07.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:07.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:07.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:07.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:07.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:07.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:07.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:07.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:07.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:07.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:07.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:07.120][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2025-08-02 16:02:07.121][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:07.122][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:07.126][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml.
biodb.DEBUG[2025-08-02 16:02:07.127][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:07.128][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:07.129][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:07.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:07.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:07.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:07.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:07.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:07.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:07.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:07.141][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.142][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.143][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.148][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:07.149][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:07.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.151][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.152][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:07.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:07.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.156][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:07.157][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:07.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.159][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.160][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:07.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:07.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.164][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:07.165][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:07.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.167][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:07.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:07.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.171][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.174][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.179][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:07.180][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:07.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.182][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.183][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:07.184][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.186][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.187][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:07.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.195][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.196][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.198][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.203][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:07.204][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:07.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.206][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.207][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:07.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:07.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.211][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:07.212][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:07.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.214][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.215][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:07.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:07.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.218][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:07.219][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:07.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.222][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:07.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:07.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:07.262][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2025-08-02 16:02:07.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:07.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:07.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:07.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:07.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:07.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:07.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:07.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:07.283][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2025-08-02 16:02:07.284][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:07.286][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:07.289][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml.
biodb.DEBUG[2025-08-02 16:02:07.290][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:07.291][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:07.292][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:07.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:07.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:07.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:07.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:07.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:07.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:07.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:07.304][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.305][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.307][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.312][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:07.313][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:07.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.314][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.316][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:07.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:07.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.319][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:07.320][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:07.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.322][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:07.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:07.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.327][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:07.328][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:07.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.330][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:07.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:07.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.335][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.336][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.337][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.342][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:07.343][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:07.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.345][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.346][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:07.347][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.349][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.350][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:07.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.354][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.355][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.356][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.361][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:07.362][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:07.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.364][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:07.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:07.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.369][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:07.370][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:07.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.372][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.373][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:07.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:07.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.376][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:07.377][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:07.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:07.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:07.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:07.421][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2025-08-02 16:02:07.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:07.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:07.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:07.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:07.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:07.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:07.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:07.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:07.447][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2025-08-02 16:02:07.448][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:07.449][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:07.453][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml.
biodb.DEBUG[2025-08-02 16:02:07.454][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:07.455][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:07.456][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:07.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:07.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:07.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:07.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:07.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:07.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:07.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:07.468][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.469][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.470][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.475][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:07.476][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:07.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.478][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.479][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:07.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:07.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.483][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:07.484][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:07.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.485][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:07.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:07.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:07.491][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:07.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.493][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:07.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:07.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.498][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.499][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.500][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.505][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:07.506][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:07.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.508][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.509][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:07.510][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.512][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.513][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:07.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.516][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.517][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.519][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.524][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:07.525][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:07.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.526][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:07.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:07.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.531][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:07.532][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:07.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.534][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.535][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:07.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:07.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.539][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:07.540][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:07.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.542][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:07.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:07.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:07.583][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2025-08-02 16:02:07.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:07.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:07.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:07.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:07.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:07.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:07.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:07.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:07.605][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2025-08-02 16:02:07.606][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:07.607][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:07.610][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml.
biodb.DEBUG[2025-08-02 16:02:07.611][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:07.613][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:07.614][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:07.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:07.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:07.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:07.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:07.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:07.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:07.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:07.625][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.626][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.628][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.633][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:07.634][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:07.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.636][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.637][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:07.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:07.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.640][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:07.641][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:07.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.643][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:07.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:07.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.648][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:07.649][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:07.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.651][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:07.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:07.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.656][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.657][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.659][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.663][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:07.664][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:07.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.666][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.667][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:07.668][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.670][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.671][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:07.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.675][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.676][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.678][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.682][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:07.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:07.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.685][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:07.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:07.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.690][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:07.691][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:07.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.693][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.694][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:07.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:07.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.707][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:07.708][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:07.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.710][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.711][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:07.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:07.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:07.751][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2025-08-02 16:02:07.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:07.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:07.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:07.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:07.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:07.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:07.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:07.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:07.772][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2025-08-02 16:02:07.773][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:07.774][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:07.778][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml.
biodb.DEBUG[2025-08-02 16:02:07.779][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:07.780][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:07.781][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:07.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:07.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:07.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:07.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:07.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:07.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:07.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:07.793][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.794][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.795][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.800][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:07.801][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:07.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.803][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.804][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:07.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:07.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.808][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:07.809][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:07.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.811][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:07.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:07.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.816][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:07.817][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:07.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.819][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:07.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:07.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.824][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.825][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.826][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.831][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:07.832][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:07.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.834][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.835][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:07.836][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.838][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.839][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:07.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.843][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.844][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.846][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:07.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.851][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:07.852][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:07.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.853][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:07.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:07.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.858][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:07.859][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:07.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.861][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.862][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:07.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:07.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.866][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:07.867][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:07.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.869][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.870][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:07.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:07.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:07.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:07.911][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2025-08-02 16:02:07.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:07.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:07.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:07.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:07.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:07.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:07.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:07.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:07.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:07.932][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2025-08-02 16:02:07.933][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:07.934][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:07.937][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml.
biodb.DEBUG[2025-08-02 16:02:07.938][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:07.939][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:07.941][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:07.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:07.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:07.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:07.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:07.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:07.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:07.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:07.952][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.953][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.955][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:07.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:07.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.966][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:07.967][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:07.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.968][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.970][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:07.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:07.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.973][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:07.974][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:07.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.976][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:07.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:07.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.981][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:07.982][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:07.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:07.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:07.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.989][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.990][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.991][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:07.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:07.996][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:07.997][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:07.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:07.999][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.000][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:08.001][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.002][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.004][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:08.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.007][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:08.008][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:08.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.010][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:08.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:08.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.015][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:08.016][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:08.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.017][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:08.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:08.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.022][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:08.023][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:08.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.025][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.026][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:08.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:08.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.030][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:08.031][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:08.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.033][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:08.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:08.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:08.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:08.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:08.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:08.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:08.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:08.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:08.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:08.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:08.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:08.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:08.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:08.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:08.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:08.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:08.074][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2025-08-02 16:02:08.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:08.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:08.107][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:08.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.125][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.126][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:08.127][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:08.128][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:08.128][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.130][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.136][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.137][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.138][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.141][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.142][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:08.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.154][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-02 16:02:08.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.172][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.173][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:08.174][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:08.175][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:08.175][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.176][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.177][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.179][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.180][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.181][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.183][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.184][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.185][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.186][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.188][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.189][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:08.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.201][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-02 16:02:08.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.224][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.225][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:08.226][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:08.227][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:08.228][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.229][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.230][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.231][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.235][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.236][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.237][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.238][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.239][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.240][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.241][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:08.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.253][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-02 16:02:08.254][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:08.255][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:08.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:08.282][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:08.284][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:08.290][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/b616afd034ed5d04cbb32f1e92c778e7.content.
sched.DEBUG[2025-08-02 16:02:08.291][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:08.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:08.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:08.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:08.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:08.376][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:08.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.395][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.396][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:08.396][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:08.397][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:08.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.399][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.400][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.402][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.403][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.406][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.407][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.407][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.408][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.409][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.411][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.412][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:08.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.424][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-02 16:02:08.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.442][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.443][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:08.444][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:08.445][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:08.446][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.447][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.448][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.449][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.450][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.451][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.453][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.454][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.455][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.456][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.457][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.458][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.459][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:08.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.478][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-08-02 16:02:08.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.495][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.496][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:08.497][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:08.498][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:08.499][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.501][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.506][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.507][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.508][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.509][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.510][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.511][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.512][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:08.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.524][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-08-02 16:02:08.525][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:08.526][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:08.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:08.539][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:08.541][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:08.546][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/4da83335ec00090f05f0a5128074d1f6.content.
sched.DEBUG[2025-08-02 16:02:08.547][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:08.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:08.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:08.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:08.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:08.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:08.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:08.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:08.692][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:08.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.710][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.711][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:08.711][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:08.712][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:08.713][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.714][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.720][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.722][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.723][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.724][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.726][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.727][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.728][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.731][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.732][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:08.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.744][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-08-02 16:02:08.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.762][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.763][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:08.763][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:08.764][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:08.765][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.766][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.767][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.769][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.770][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.772][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.773][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.774][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.775][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.776][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.778][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.779][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:08.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.791][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-08-02 16:02:08.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.808][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.809][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:08.810][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:08.811][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:08.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.815][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.816][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.817][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.819][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.820][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.821][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.822][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.823][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.824][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.825][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:08.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.837][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-08-02 16:02:08.838][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:08.839][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:08.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:08.852][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:08.854][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:08.856][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d4eeadefe2fd6c7a45a5c47263c29105.content.
sched.DEBUG[2025-08-02 16:02:08.857][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:08.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:08.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:02:08.900][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:08.902][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:08.905][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8a1fe476d9f07138803c04b6da6259b3.content.
sched.DEBUG[2025-08-02 16:02:08.906][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:08.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:08.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:08.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:08.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:08.974][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:08.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:08.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:08.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:08.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:08.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:08.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:08.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:08.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:08.992][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.993][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:08.994][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:08.995][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:08.996][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:08.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:08.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:08.999][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.000][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.001][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.003][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.004][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.005][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.005][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.006][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.008][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.009][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:09.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.021][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-08-02 16:02:09.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.039][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.040][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:09.040][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:09.041][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:09.042][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.046][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.047][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.049][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.050][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.051][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.053][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.055][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.056][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:09.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.068][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-08-02 16:02:09.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.086][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.087][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:09.088][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:09.089][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:09.090][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.093][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.094][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.097][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.098][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.099][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.100][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.101][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.102][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.103][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:09.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.116][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-08-02 16:02:09.117][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:09.117][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:09.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:09.145][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:09.147][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:09.149][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-02 16:02:09.150][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:09.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:02:09.173][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:09.175][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:09.177][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-02 16:02:09.178][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:09.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:09.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:09.225][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:09.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.243][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.244][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:09.245][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:09.246][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:09.247][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.250][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.251][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.254][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.255][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.256][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.257][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.258][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.259][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.260][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:09.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.272][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-02 16:02:09.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.290][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.291][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:09.292][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:09.293][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:09.293][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.294][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.295][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.297][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.298][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.299][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.301][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.303][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.303][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.304][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.306][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.307][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:09.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.319][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-02 16:02:09.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.337][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.338][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:09.339][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:09.340][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:09.341][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.342][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.343][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.344][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.345][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.348][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.350][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.351][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.352][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.353][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.354][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:09.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.367][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-02 16:02:09.368][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:09.368][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:09.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:09.381][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:09.383][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:09.385][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-02 16:02:09.386][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:09.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:09.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:02:09.430][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:09.432][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:09.435][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-02 16:02:09.436][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:09.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:09.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:09.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:09.504][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:09.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.523][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:09.524][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:09.525][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:09.526][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.527][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.529][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.530][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.533][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.535][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.538][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.539][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:09.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.551][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-02 16:02:09.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.569][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:09.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:09.571][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:09.572][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.573][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.574][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.576][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.579][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.580][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.581][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.585][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.586][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:09.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.598][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-02 16:02:09.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.616][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.617][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:09.618][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:09.618][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:09.619][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.623][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.625][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.627][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.628][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.629][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.629][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.632][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.633][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:09.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.645][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-02 16:02:09.646][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:09.647][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:09.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:09.660][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:09.662][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:09.664][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-08-02 16:02:09.665][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:09.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:09.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:09.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:09.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:09.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:09.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:09.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:09.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:02:09.833][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:09.836][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:09.838][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-02 16:02:09.839][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:09.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:09.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:09.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:09.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:09.901][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:09.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.919][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.920][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:09.920][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:09.921][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:09.922][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.923][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.924][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.926][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.931][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.932][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.933][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.935][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.936][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:09.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.948][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-02 16:02:09.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:09.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:09.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:09.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:09.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:09.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:09.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:09.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.965][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.971][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:09.972][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:09.973][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:09.974][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.978][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.981][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.982][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.983][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:09.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.985][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.987][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.988][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:09.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:09.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:09.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:09.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.000][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-02 16:02:10.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.018][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:10.019][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:10.019][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:10.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.022][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.024][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.025][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.026][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.027][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.029][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.033][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.034][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:10.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.046][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-02 16:02:10.047][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:10.047][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:10.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:10.074][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:10.076][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:10.079][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/52d6fe8916b2b36c38f3e0a454a0ac24.content.
sched.DEBUG[2025-08-02 16:02:10.080][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:10.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.202][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:10.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.226][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:10.227][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:10.228][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:10.229][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.231][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.232][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.236][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.237][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.238][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.241][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.242][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:10.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.254][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-02 16:02:10.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.271][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.272][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:10.273][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:10.274][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:10.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.278][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.282][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.283][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.284][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.285][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.287][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.288][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:10.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.300][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-08-02 16:02:10.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.318][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.319][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:10.320][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:10.321][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:10.322][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.323][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.324][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.326][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.326][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.327][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.329][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.330][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.331][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.332][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.335][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.336][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:10.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.348][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-08-02 16:02:10.349][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:10.350][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:10.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:10.362][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:10.364][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:10.370][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/a1f794ee7474001c459ff6d20307d75d.content.
sched.DEBUG[2025-08-02 16:02:10.371][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:10.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.435][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:10.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.453][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.454][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:10.455][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:10.455][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:10.456][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.460][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.462][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.469][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.470][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.471][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.472][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.473][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.476][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:10.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.488][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-02 16:02:10.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.505][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.506][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:10.507][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:10.508][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:10.509][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.510][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.510][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.512][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.513][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.514][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.516][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.517][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.518][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.520][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.521][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.522][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:10.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.534][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-02 16:02:10.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.552][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.553][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:10.553][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:10.554][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:10.555][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.556][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.557][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.559][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.560][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.561][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.562][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.563][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.564][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:10.565][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.566][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.568][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.569][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:10.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:10.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.581][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-08-02 16:02:10.582][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:10.583][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:10.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:10.595][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:10.598][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:10.602][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/fee290bbc11906f18fd9eae3d71c81ab.content.
sched.DEBUG[2025-08-02 16:02:10.603][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:10.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:10.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:10.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:10.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:10.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:10.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:10.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:10.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:10.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:10.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:10.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:10.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:11.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:11.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:11.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:11.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:11.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:11.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:11.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:11.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:11.172][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:11.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.191][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:11.192][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:11.193][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:11.194][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.197][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.198][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.206][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.207][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.208][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.209][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.210][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.212][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.213][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:11.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.225][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-02 16:02:11.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.243][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:11.243][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:11.244][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:11.245][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.247][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.249][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.250][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.251][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.252][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.253][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.254][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.255][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.258][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.258][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:11.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.271][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-08-02 16:02:11.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.288][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.289][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:11.289][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:11.290][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:11.291][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.292][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.295][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.297][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.298][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.299][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.300][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.301][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.302][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.304][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.305][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:11.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.317][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-08-02 16:02:11.318][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:11.319][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-02 16:02:11.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:11.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:11.389][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:11.392][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:11.398][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-08-02 16:02:11.399][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:11.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:11.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:11.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:11.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:11.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:11.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:11.518][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2025-08-02 16:02:11.519][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:11.520][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:11.525][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml.
biodb.DEBUG[2025-08-02 16:02:11.526][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:11.527][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:11.528][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:11.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.540][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:11.541][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:11.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.543][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:11.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:11.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.547][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:11.548][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:11.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.550][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.551][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:11.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:11.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.555][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:11.556][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:11.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.558][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:11.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:11.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.563][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:11.564][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:11.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.566][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:11.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:11.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.570][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:11.571][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:11.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.573][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:11.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:11.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.578][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:11.579][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:11.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.581][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.582][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:11.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:11.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.586][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:11.587][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.589][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.590][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:11.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.593][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.594][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.596][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.601][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:11.602][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:11.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.604][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:11.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:11.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.609][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:11.610][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:11.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.612][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.613][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:11.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:11.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.616][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:11.617][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:11.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.619][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.620][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:11.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:11.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:11.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:11.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:11.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:11.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:11.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:11.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:11.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:11.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:11.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:11.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:11.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:11.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:11.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:11.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:11.661][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2025-08-02 16:02:11.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:11.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:11.683][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2025-08-02 16:02:11.684][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:11.685][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:11.690][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml.
biodb.DEBUG[2025-08-02 16:02:11.691][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:11.692][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:11.693][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:11.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.710][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:11.711][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:11.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.713][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:11.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:11.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.718][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:11.719][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:11.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.721][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.722][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:11.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:11.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.726][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:11.726][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:11.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.728][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.729][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:11.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:11.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.733][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:11.734][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:11.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.736][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:11.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:11.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.741][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:11.742][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:11.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.743][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:11.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:11.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.748][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:11.749][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:11.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.751][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.752][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:11.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:11.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.756][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:11.757][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.758][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.759][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:11.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:11.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.763][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.764][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.766][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.770][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:11.771][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:11.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.773][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.774][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:11.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:11.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.778][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:11.779][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:11.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.781][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.782][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:11.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:11.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.786][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:11.787][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:11.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.788][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:11.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:11.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:11.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:11.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:11.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:11.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:11.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:11.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:11.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:11.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:11.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:11.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:11.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:11.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:11.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:11.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:11.830][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2025-08-02 16:02:11.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:11.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:11.842][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:11.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.861][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.861][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:11.862][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:11.863][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:11.864][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.865][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.868][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.869][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.870][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.871][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.873][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.874][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.875][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.877][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.878][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:11.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.890][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-02 16:02:11.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.908][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.909][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:11.909][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:11.910][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:11.911][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.913][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.915][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.916][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.918][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.919][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.920][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.921][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.922][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.924][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.925][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:11.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.937][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-02 16:02:11.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:11.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:11.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:11.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:11.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.960][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.961][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:11.962][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:11.963][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:11.964][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.965][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.967][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.971][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.972][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.973][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:11.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.976][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.977][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:11.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:11.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:11.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:11.989][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-08-02 16:02:11.990][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:11.991][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:11.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:11.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:11.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:11.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:12.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:12.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:12.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:12.004][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:12.006][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:12.013][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/c90d0c20ab1b82ab9da517c0299e1056.content.
sched.DEBUG[2025-08-02 16:02:12.014][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:12.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:12.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:12.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:12.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:12.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:12.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:12.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:12.029][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2025-08-02 16:02:12.030][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:12.031][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:12.036][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml.
biodb.DEBUG[2025-08-02 16:02:12.037][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:12.038][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:12.039][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:12.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:12.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:12.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:12.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:12.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:12.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:12.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:12.050][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.051][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.053][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.058][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:12.059][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:12.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.061][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.062][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:12.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:12.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.066][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:12.067][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:12.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.069][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.070][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:12.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:12.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.074][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:12.075][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:12.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.077][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:12.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:12.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.081][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:12.082][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:12.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.084][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:12.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:12.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.089][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:12.090][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:12.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.092][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.093][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:12.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:12.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.097][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:12.098][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:12.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.099][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.101][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:12.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:12.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.104][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.105][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.107][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.112][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:12.113][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:12.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.115][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:12.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:12.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.120][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:12.121][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:12.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.122][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.124][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:12.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:12.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.127][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:12.128][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:12.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.130][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:12.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:12.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:12.172][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2025-08-02 16:02:12.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:12.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:12.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:12.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:12.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:12.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:12.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:12.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:12.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:12.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:12.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:12.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:12.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:12.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:12.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:12.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:12.220][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2025-08-02 16:02:12.221][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:12.222][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:12.227][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml.
biodb.DEBUG[2025-08-02 16:02:12.228][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:12.229][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:12.230][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:12.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:12.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:12.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:12.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:12.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:12.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:12.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:12.241][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.242][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.244][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.249][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:12.250][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:12.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.252][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.253][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:12.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:12.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.256][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:12.257][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:12.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.259][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:12.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:12.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.264][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:12.265][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:12.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.267][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:12.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:12.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.271][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:12.272][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:12.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.274][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:12.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:12.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.279][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:12.280][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:12.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.282][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.283][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:12.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:12.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.287][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:12.287][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:12.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.289][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.290][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:12.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:12.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.294][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.295][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.297][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.302][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:12.303][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:12.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.304][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:12.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:12.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.309][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:12.310][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:12.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.312][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.313][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:12.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:12.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.317][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:12.318][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:12.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.320][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.321][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:12.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:12.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:12.361][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2025-08-02 16:02:12.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:12.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:12.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:12.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:12.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:12.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:12.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:12.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:12.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:12.394][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:12.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:12.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:12.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:12.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:12.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:12.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:12.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:12.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.412][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:12.413][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:12.414][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:12.415][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:12.416][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:12.417][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.418][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.420][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.423][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.424][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:12.425][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:12.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.427][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.429][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.430][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:12.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.442][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-08-02 16:02:12.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:12.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:12.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:12.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:12.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:12.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:12.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:12.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.465][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:12.466][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:12.467][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:12.468][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:12.469][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:12.470][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.471][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.474][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.475][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.476][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.477][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:12.478][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:12.479][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.480][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.482][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.483][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:12.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.495][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-02 16:02:12.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:12.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:12.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:12.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:12.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:12.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:12.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:12.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.512][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:12.513][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:12.514][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:12.515][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:12.516][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:12.517][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.518][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.519][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.520][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.521][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.523][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.524][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:12.525][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:12.526][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.527][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.528][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.529][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:12.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.541][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-02 16:02:12.542][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:12.543][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:12.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:12.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:12.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:12.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:12.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:12.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:12.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:12.555][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:12.558][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:12.561][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/633ffa8aab56d260ba52bc860645ac89.content.
sched.DEBUG[2025-08-02 16:02:12.562][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:12.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:12.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:12.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:12.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:12.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:12.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:12.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:12.573][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2025-08-02 16:02:12.574][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:12.576][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:12.580][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml.
biodb.DEBUG[2025-08-02 16:02:12.581][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:12.582][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:12.583][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:12.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:12.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:12.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:12.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:12.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:12.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:12.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:12.595][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.596][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.598][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.603][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:12.604][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:12.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.605][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.606][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:12.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:12.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.610][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:12.611][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:12.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.613][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.614][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:12.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:12.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.618][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:12.619][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:12.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.621][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:12.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:12.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.626][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:12.626][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:12.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.628][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:12.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:12.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.633][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:12.634][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:12.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.636][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.637][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:12.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:12.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.641][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:12.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:12.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.645][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.646][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.647][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.652][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:12.653][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:12.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.655][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:12.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:12.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.660][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:12.661][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:12.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.663][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.664][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:12.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:12.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.668][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:12.669][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:12.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.670][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.672][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:12.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:12.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:12.718][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2025-08-02 16:02:12.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:12.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:12.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:12.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:12.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:12.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:12.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:12.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:12.739][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2025-08-02 16:02:12.740][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:12.741][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:12.744][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml.
biodb.DEBUG[2025-08-02 16:02:12.745][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:12.746][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:12.747][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:12.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:12.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:12.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:12.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:12.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:12.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:12.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:12.759][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.760][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.762][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.767][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:12.768][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:12.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.769][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.770][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:12.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:12.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.774][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:12.775][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:12.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.778][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:12.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:12.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.782][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:12.783][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:12.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.785][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:12.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:12.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.789][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:12.790][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:12.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:12.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:12.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.797][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:12.798][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:12.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.800][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.801][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:12.802][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:12.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.804][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.805][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:12.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:12.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.808][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.809][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.811][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.816][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:12.817][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:12.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.819][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:12.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:12.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.824][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:12.825][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:12.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.826][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.828][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:12.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:12.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.831][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:12.832][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:12.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.834][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:12.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:12.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:12.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:12.876][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2025-08-02 16:02:12.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:12.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:12.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:12.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:12.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:12.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:12.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:12.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:12.898][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2025-08-02 16:02:12.899][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:12.900][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:12.904][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml.
biodb.DEBUG[2025-08-02 16:02:12.905][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:12.906][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:12.907][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:12.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:12.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:12.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:12.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:12.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:12.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:12.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:12.919][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.920][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.922][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:12.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:12.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.927][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:12.928][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:12.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.931][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:12.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:12.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.935][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:12.935][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:12.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:12.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:12.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.942][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:12.943][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:12.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.945][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:12.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:12.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.950][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:12.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:12.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.952][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:12.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:12.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.957][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:12.958][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:12.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.960][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.977][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:12.978][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:12.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.980][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.981][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:12.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:12.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.985][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.986][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.988][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:12.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.993][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:12.994][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:12.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:12.996][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:12.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:12.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:12.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.001][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:13.002][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:13.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.003][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.004][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:13.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:13.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.008][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:13.009][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:13.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.011][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.012][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:13.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:13.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:13.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:13.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:13.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:13.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:13.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:13.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:13.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:13.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:13.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:13.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:13.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:13.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:13.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:13.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:13.052][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2025-08-02 16:02:13.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:13.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:13.074][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2025-08-02 16:02:13.074][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:13.076][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:13.080][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml.
biodb.DEBUG[2025-08-02 16:02:13.082][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:13.083][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:13.084][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:13.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.096][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:13.097][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:13.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:13.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:13.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.103][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:13.104][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:13.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.107][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:13.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:13.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.111][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:13.112][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:13.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.114][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.115][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:13.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:13.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.119][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:13.120][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:13.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.122][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:13.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:13.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.127][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:13.128][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:13.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.129][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:13.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:13.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.134][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:13.135][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:13.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.137][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.138][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:13.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:13.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.142][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:13.143][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:13.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.145][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.146][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:13.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:13.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.150][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.151][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.152][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.157][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:13.158][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:13.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.160][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.161][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:13.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:13.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.165][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:13.166][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:13.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.169][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:13.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:13.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.173][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:13.174][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:13.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.176][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.177][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:13.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:13.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:13.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:13.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:13.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:13.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:13.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:13.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:13.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:13.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:13.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:13.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:13.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:13.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:13.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:13.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:13.218][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2025-08-02 16:02:13.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:13.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:13.256][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:13.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.274][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.275][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:13.276][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:13.277][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:13.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.281][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.282][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.285][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.286][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.287][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.288][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.290][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.291][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:13.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.303][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-08-02 16:02:13.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.321][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.322][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:13.322][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:13.323][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:13.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.328][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.329][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.330][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.331][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.332][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.333][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.334][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.335][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.337][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.338][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:13.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.350][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-08-02 16:02:13.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.368][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.369][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:13.370][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:13.371][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:13.372][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.372][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.373][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.375][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.376][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.377][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.380][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.381][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.382][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.383][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.384][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.385][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:13.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.398][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-08-02 16:02:13.399][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:13.399][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:13.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:13.426][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:13.429][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:13.430][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-02 16:02:13.431][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-02 16:02:13.434][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:13.436][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:13.439][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-02 16:02:13.440][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:13.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:13.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:13.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:13.507][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:13.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.525][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.526][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:13.527][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:13.528][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:13.529][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.530][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.530][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.536][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.537][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.538][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.539][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.541][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.542][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:13.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.554][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-02 16:02:13.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.572][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.573][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:13.573][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:13.574][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:13.575][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.576][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.579][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.580][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.581][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.583][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.584][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.584][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.588][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.589][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:13.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.601][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-02 16:02:13.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.619][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.620][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:13.621][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:13.622][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:13.623][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.625][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.626][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.627][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.628][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.630][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.631][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.632][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.633][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.636][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.637][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:13.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.649][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-02 16:02:13.650][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:13.651][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:13.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:13.663][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:13.666][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:13.668][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-08-02 16:02:13.669][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:13.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:13.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:13.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:13.737][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:13.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.755][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.756][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:13.757][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:13.758][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:13.759][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.760][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.762][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.764][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.766][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.767][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.768][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.769][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.770][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.771][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.772][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:13.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.784][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-02 16:02:13.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.802][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.803][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:13.804][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:13.804][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:13.805][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.806][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.807][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.809][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.810][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.811][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.812][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.813][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.814][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.815][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.816][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.818][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.819][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:13.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.831][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-02 16:02:13.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.849][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.850][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:13.850][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:13.851][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:13.852][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.854][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.856][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.858][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.860][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.860][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.861][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.863][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.865][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.866][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:13.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.878][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-02 16:02:13.879][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:13.880][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:13.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:13.892][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:13.895][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:13.898][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-02 16:02:13.899][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:13.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:13.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:13.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:13.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:13.963][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:13.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:13.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:13.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:13.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:13.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:13.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:13.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:13.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.987][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.988][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:13.989][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:13.990][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:13.991][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:13.992][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.993][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.995][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:13.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:13.998][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:13.999][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:14.000][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:14.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.004][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.005][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:14.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.017][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-02 16:02:14.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:14.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:14.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:14.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:14.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:14.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:14.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:14.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.035][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:14.035][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:14.036][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:14.037][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:14.038][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:14.039][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.040][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.042][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.043][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.045][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.046][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:14.047][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:14.048][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.049][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.052][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:14.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.064][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-08-02 16:02:14.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:14.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:14.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:14.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:14.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:14.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:14.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:14.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.081][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:14.082][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:14.083][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:14.084][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:14.085][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:14.086][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.087][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.089][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.092][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.093][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:14.094][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:14.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.099][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:14.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.111][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-08-02 16:02:14.112][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:14.113][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:14.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:14.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:14.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:14.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:14.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:14.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:14.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:14.140][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:14.143][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:14.148][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/76cb051f1eabf309f608d38ca52ffd0b.content.
sched.DEBUG[2025-08-02 16:02:14.149][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:14.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:14.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:14.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:14.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:14.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:14.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:14.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:14.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:14.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:14.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:14.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:14.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:14.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:14.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:14.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:14.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:14.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:14.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:14.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:14.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:14.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:14.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:14.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:14.201][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2025-08-02 16:02:14.202][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:14.203][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:14.208][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml.
biodb.DEBUG[2025-08-02 16:02:14.209][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:14.210][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:14.211][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:14.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:14.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:14.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:14.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:14.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:14.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:14.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:14.223][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.224][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.226][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.231][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:14.232][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:14.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.239][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.240][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:14.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:14.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.245][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:14.246][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:14.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.247][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:14.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:14.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.253][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:14.254][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:14.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.256][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:14.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:14.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:14.262][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:14.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.264][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:14.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:14.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.268][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:14.269][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:14.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.271][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.272][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:14.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:14.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.276][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:14.277][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:14.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.279][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.280][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:14.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:14.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.283][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.284][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.286][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.291][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:14.292][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:14.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.294][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:14.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:14.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.299][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:14.300][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:14.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.301][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.302][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:14.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:14.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.306][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:14.307][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:14.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.309][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:14.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:14.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:14.351][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2025-08-02 16:02:14.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:14.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:14.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:14.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:14.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:14.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:14.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:14.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:14.373][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2025-08-02 16:02:14.374][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:14.376][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:14.380][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml.
biodb.DEBUG[2025-08-02 16:02:14.381][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:14.382][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:14.383][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:14.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:14.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:14.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:14.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:14.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:14.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:14.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:14.395][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.396][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.398][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.403][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:14.404][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:14.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.406][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.407][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:14.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:14.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.411][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:14.412][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:14.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.413][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.415][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:14.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:14.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.418][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:14.419][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:14.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.421][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:14.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:14.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.426][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:14.427][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:14.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.429][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:14.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:14.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.434][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:14.435][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:14.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.436][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.438][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:14.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:14.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.441][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:14.442][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:14.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.444][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.445][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:14.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:14.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.449][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.450][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.452][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.457][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:14.458][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:14.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.461][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:14.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:14.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.464][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:14.465][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:14.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.467][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.468][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:14.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:14.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.472][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:14.473][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:14.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:14.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:14.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:14.522][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2025-08-02 16:02:14.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:14.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:14.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:14.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:14.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:14.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:14.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:14.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:14.543][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2025-08-02 16:02:14.544][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:14.545][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:14.550][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml.
biodb.DEBUG[2025-08-02 16:02:14.551][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:14.552][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:14.553][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:14.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:14.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:14.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:14.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:14.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:14.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:14.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:14.565][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.568][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.572][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:14.573][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:14.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.575][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.576][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:14.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:14.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.580][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:14.581][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:14.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.583][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:14.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:14.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.588][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:14.589][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:14.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.590][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:14.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:14.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.595][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:14.596][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:14.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.598][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:14.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:14.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.603][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:14.604][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:14.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.606][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.607][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:14.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:14.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.610][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:14.611][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:14.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.613][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.614][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:14.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:14.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.618][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.619][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.621][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.626][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:14.627][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:14.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.629][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:14.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:14.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.634][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:14.635][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:14.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.636][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.637][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:14.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:14.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.641][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:14.642][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:14.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.644][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:14.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:14.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:14.686][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2025-08-02 16:02:14.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:14.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:14.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:14.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:14.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:14.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:14.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:14.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:14.707][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2025-08-02 16:02:14.708][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:14.709][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:14.714][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml.
biodb.DEBUG[2025-08-02 16:02:14.715][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:14.716][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:14.718][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:14.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:14.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:14.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:14.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:14.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:14.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:14.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:14.729][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.730][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.732][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.737][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:14.738][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:14.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.740][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.741][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:14.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:14.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.750][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:14.751][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:14.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.753][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.754][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:14.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:14.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.758][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:14.759][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:14.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.761][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:14.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:14.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.765][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:14.766][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:14.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.768][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:14.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:14.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.773][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:14.774][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:14.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.776][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.777][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:14.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:14.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.780][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:14.781][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:14.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.783][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.784][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:14.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:14.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.788][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.789][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.791][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.795][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:14.796][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:14.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.798][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:14.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:14.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.803][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:14.804][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:14.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.806][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.807][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:14.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:14.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.810][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:14.811][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:14.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.813][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.814][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:14.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:14.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:14.854][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2025-08-02 16:02:14.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:14.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:14.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:14.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:14.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:14.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:14.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:14.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:14.876][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2025-08-02 16:02:14.877][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:14.878][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:14.882][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml.
biodb.DEBUG[2025-08-02 16:02:14.883][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:14.885][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:14.886][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:14.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:14.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:14.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:14.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:14.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:14.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:14.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:14.897][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.898][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.900][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.905][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:14.906][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:14.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.908][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.909][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:14.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:14.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.913][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:14.914][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:14.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.916][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.917][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:14.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:14.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.921][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:14.921][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:14.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.923][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:14.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:14.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.928][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:14.929][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:14.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.931][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:14.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:14.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.936][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:14.937][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:14.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.938][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.940][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:14.941][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:14.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.942][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.943][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:14.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:14.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.947][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.948][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.950][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:14.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.955][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:14.956][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:14.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.957][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.959][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:14.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:14.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.962][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:14.963][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:14.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.965][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.966][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:14.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:14.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.970][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:14.971][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:14.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.973][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:14.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:14.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:14.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:14.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:14.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:14.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:14.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:15.020][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2025-08-02 16:02:15.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:15.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:15.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:15.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:15.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:15.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:15.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:15.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:15.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:15.052][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:15.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:15.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:15.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:15.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:15.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:15.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:15.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:15.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.070][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:15.071][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:15.072][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:15.073][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:15.073][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:15.074][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.077][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.078][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.079][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.081][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.082][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:15.082][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:15.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.084][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.086][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.087][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:15.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.099][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-02 16:02:15.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:15.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:15.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:15.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:15.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:15.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:15.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:15.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.117][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:15.118][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:15.119][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:15.120][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:15.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:15.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.122][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.124][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.128][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.129][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:15.130][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:15.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.133][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.134][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:15.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.146][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-02 16:02:15.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:15.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:15.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:15.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:15.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:15.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:15.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:15.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:15.165][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:15.166][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:15.167][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:15.168][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:15.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.171][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.173][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.175][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.176][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:15.177][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:15.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.180][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.181][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:15.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.194][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-02 16:02:15.195][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:15.195][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:15.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:15.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:15.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:15.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:15.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:15.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:15.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:15.208][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:15.210][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:15.218][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/3d37e3be2f5c6d64498effb7934e924b.content.
sched.DEBUG[2025-08-02 16:02:15.219][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:15.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:15.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:15.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:15.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:15.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:15.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:15.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:15.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:15.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:15.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:15.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:15.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:15.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:15.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:15.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:15.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:15.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:15.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:15.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:15.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:15.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:15.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:15.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:15.280][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2025-08-02 16:02:15.281][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:15.282][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:15.286][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml.
biodb.DEBUG[2025-08-02 16:02:15.287][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:15.288][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:15.289][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:15.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:15.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:15.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:15.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:15.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:15.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:15.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:15.300][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.301][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.303][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.308][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:15.309][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:15.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.310][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.312][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:15.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:15.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.315][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:15.316][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:15.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.318][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.319][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:15.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:15.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.323][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:15.324][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:15.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.325][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:15.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:15.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.330][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:15.331][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:15.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:15.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:15.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.338][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:15.339][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:15.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.340][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.342][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:15.343][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:15.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.344][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.345][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:15.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:15.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.349][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.350][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.352][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.357][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:15.358][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:15.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.359][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:15.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:15.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.364][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:15.365][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:15.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.367][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.368][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:15.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:15.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.372][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:15.373][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:15.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.375][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.376][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:15.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:15.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:15.417][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2025-08-02 16:02:15.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:15.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:15.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:15.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:15.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:15.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:15.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:15.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:15.439][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2025-08-02 16:02:15.439][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:15.441][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:15.445][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml.
biodb.DEBUG[2025-08-02 16:02:15.446][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:15.447][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:15.448][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:15.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:15.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:15.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:15.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:15.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:15.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:15.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:15.460][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.461][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.463][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.468][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:15.469][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:15.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.470][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.471][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:15.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:15.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.475][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:15.476][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:15.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.478][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.479][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:15.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:15.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.483][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:15.484][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:15.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.485][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:15.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:15.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.490][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:15.491][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:15.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.493][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:15.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:15.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.498][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:15.504][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:15.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.506][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.507][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:15.508][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:15.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.510][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.511][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:15.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:15.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.515][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.516][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.518][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.523][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:15.523][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:15.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.525][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:15.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:15.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.530][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:15.531][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:15.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.533][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.534][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:15.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:15.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:15.539][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:15.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.540][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:15.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:15.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:15.581][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2025-08-02 16:02:15.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:15.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:15.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:15.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:15.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:15.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:15.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:15.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:15.603][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2025-08-02 16:02:15.604][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:15.605][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:15.610][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml.
biodb.DEBUG[2025-08-02 16:02:15.611][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:15.612][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:15.613][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:15.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:15.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:15.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:15.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:15.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:15.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:15.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:15.625][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.626][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.628][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.633][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:15.634][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:15.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.637][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:15.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:15.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.640][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:15.641][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:15.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.643][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:15.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:15.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.648][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:15.649][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:15.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.651][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:15.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:15.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.656][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:15.657][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:15.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.658][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:15.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:15.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.663][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:15.664][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:15.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.666][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.667][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:15.668][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:15.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.670][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.671][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:15.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:15.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.675][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.676][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.677][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.682][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:15.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:15.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.685][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:15.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:15.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.690][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:15.691][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:15.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.693][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.694][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:15.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:15.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.698][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:15.699][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:15.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.700][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:15.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:15.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:15.742][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2025-08-02 16:02:15.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:15.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:15.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:15.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:15.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:15.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:15.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:15.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:15.770][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2025-08-02 16:02:15.771][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:15.772][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:15.776][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml.
biodb.DEBUG[2025-08-02 16:02:15.777][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:15.779][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:15.780][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:15.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:15.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:15.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:15.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:15.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:15.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:15.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:15.791][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.794][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.799][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:15.800][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:15.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.802][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.803][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:15.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:15.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.806][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:15.807][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:15.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.809][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:15.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:15.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.814][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:15.815][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:15.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.817][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:15.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:15.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.821][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:15.822][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:15.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.824][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:15.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:15.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.829][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:15.830][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:15.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.831][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.833][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:15.834][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:15.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.835][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.836][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:15.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:15.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.840][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.841][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.843][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.848][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:15.849][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:15.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.850][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:15.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:15.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.855][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:15.856][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:15.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.858][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.859][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:15.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:15.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.863][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:15.864][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:15.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.866][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:15.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:15.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:15.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:15.908][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2025-08-02 16:02:15.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:15.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:15.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:15.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:15.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:15.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:15.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:15.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:15.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:15.929][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2025-08-02 16:02:15.930][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:15.932][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:15.936][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml.
biodb.DEBUG[2025-08-02 16:02:15.937][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:15.938][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:15.939][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:15.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:15.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:15.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:15.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:15.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:15.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:15.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:15.951][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.952][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.954][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:15.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:15.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.959][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:15.960][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:15.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.961][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.963][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:15.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:15.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.966][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:15.967][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:15.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.969][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:15.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:15.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.974][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:15.975][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:15.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.977][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:15.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:15.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.982][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:15.983][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:15.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:15.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:15.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.989][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:15.990][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:15.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.992][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.993][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:15.994][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:15.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:15.996][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:15.997][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:15.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:15.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.001][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.002][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.004][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.014][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:16.015][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:16.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.017][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:16.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:16.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.022][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:16.023][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:16.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.025][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.026][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:16.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:16.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.030][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:16.031][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:16.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.032][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.033][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:16.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:16.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:16.074][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2025-08-02 16:02:16.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:16.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:16.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:16.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:16.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:16.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:16.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:16.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:16.095][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2025-08-02 16:02:16.096][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:16.097][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:16.101][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml.
biodb.DEBUG[2025-08-02 16:02:16.102][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:16.103][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:16.104][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:16.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:16.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:16.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:16.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:16.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:16.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:16.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:16.116][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.117][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.119][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.124][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:16.125][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:16.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.127][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.128][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:16.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:16.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.132][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:16.133][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:16.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.135][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.136][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:16.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:16.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.140][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:16.141][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:16.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.143][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:16.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:16.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.148][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:16.148][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:16.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.150][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:16.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:16.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.155][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:16.156][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:16.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.159][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:16.160][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:16.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.162][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.163][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:16.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:16.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.167][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.168][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.169][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.174][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:16.175][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:16.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.177][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:16.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:16.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.182][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:16.183][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:16.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.185][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.186][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:16.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:16.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.190][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:16.191][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:16.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.192][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.193][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:16.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:16.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:16.234][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2025-08-02 16:02:16.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:16.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:16.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:16.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:16.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:16.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:16.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:16.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:16.261][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2025-08-02 16:02:16.262][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:16.263][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:16.267][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml.
biodb.DEBUG[2025-08-02 16:02:16.268][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:16.270][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:16.271][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:16.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:16.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:16.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:16.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:16.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:16.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:16.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:16.282][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.283][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.285][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.290][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:16.291][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:16.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.293][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.294][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:16.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:16.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.298][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:16.299][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:16.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.300][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.301][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:16.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:16.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.305][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:16.306][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:16.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:16.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:16.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.313][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:16.314][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:16.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:16.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:16.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.320][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:16.321][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:16.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.323][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.324][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:16.325][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:16.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.327][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.328][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:16.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:16.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.331][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.332][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.334][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.339][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:16.340][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:16.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.342][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.343][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:16.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:16.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.347][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:16.348][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:16.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.349][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.350][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:16.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:16.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.354][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:16.355][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:16.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.357][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.358][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:16.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:16.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:16.399][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2025-08-02 16:02:16.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:16.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:16.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:16.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:16.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:16.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:16.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:16.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:16.421][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2025-08-02 16:02:16.422][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:16.423][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:16.427][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml.
biodb.DEBUG[2025-08-02 16:02:16.428][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:16.429][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:16.430][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:16.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:16.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:16.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:16.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:16.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:16.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:16.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:16.442][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.443][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.445][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.450][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:16.451][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:16.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.453][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.454][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:16.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:16.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.457][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:16.458][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:16.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.460][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.461][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:16.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:16.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.465][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:16.466][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:16.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.468][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:16.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:16.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.473][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:16.474][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:16.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:16.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:16.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.480][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:16.481][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:16.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.483][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.484][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:16.485][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:16.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.488][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:16.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:16.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.492][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.493][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.494][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.499][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:16.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:16.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:16.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:16.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.507][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:16.513][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:16.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.515][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.517][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:16.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:16.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.521][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:16.522][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:16.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.523][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.525][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:16.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:16.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:16.565][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2025-08-02 16:02:16.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:16.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:16.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:16.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:16.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:16.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:16.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:16.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:16.586][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2025-08-02 16:02:16.587][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:16.588][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:16.592][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml.
biodb.DEBUG[2025-08-02 16:02:16.593][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:16.594][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:16.595][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:16.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:16.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:16.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:16.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:16.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:16.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:16.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:16.607][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.608][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.610][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.614][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:16.615][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:16.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.617][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.618][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:16.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:16.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.622][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:16.623][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:16.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.625][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.626][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:16.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:16.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.630][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:16.631][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:16.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.633][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.634][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:16.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:16.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.636][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.638][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:16.639][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:16.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.642][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:16.642][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:16.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.644][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.645][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:16.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:16.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.649][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.650][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.652][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.657][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:16.658][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:16.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.660][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.661][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:16.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:16.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.665][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:16.666][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:16.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.667][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.668][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:16.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:16.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.672][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:16.673][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:16.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.675][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:16.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:16.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:16.717][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2025-08-02 16:02:16.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:16.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:16.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:16.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:16.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:16.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:16.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:16.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:16.738][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2025-08-02 16:02:16.739][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:16.741][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:16.744][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml.
biodb.DEBUG[2025-08-02 16:02:16.745][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:16.746][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:16.747][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:16.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:16.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:16.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:16.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:16.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:16.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:16.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:16.759][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.765][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.768][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.773][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:16.774][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:16.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.777][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:16.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:16.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.780][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:16.781][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:16.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.783][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:16.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:16.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.788][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:16.789][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:16.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.791][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.792][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:16.793][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:16.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.794][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.795][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:16.796][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:16.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.798][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.799][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:16.800][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:16.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.802][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.803][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:16.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:16.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.807][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.808][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.809][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.814][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:16.815][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:16.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.817][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.818][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:16.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:16.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.822][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:16.823][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:16.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.825][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.826][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:16.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:16.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.829][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:16.830][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:16.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.832][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:16.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:16.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:16.874][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2025-08-02 16:02:16.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:16.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:16.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:16.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:16.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:16.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:16.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:16.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:16.895][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2025-08-02 16:02:16.896][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:16.897][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:16.901][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml.
biodb.DEBUG[2025-08-02 16:02:16.902][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:16.903][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:16.904][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:16.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:16.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:16.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:16.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:16.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:16.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:16.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:16.916][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.917][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.919][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:16.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:16.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.924][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:16.925][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:16.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.927][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.928][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:16.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:16.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.931][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:16.932][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:16.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:16.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:16.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.939][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:16.940][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:16.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.942][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:16.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:16.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.947][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:16.948][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:16.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.949][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:16.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:16.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.954][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:16.955][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:16.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.957][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.958][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:16.959][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:16.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.961][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.962][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:16.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:16.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.966][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.967][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.968][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:16.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.973][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:16.974][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:16.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.976][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:16.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:16.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.981][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:16.982][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:16.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.985][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:16.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:16.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.989][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:16.990][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:16.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.991][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:16.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:16.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:16.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:16.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:16.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:17.039][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2025-08-02 16:02:17.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:17.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:17.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:17.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:17.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:17.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:17.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:17.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:17.060][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2025-08-02 16:02:17.061][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:17.062][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:17.066][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml.
biodb.DEBUG[2025-08-02 16:02:17.067][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:17.068][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:17.069][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:17.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:17.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:17.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:17.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:17.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:17.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:17.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:17.081][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.082][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.083][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.088][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:17.089][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:17.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.091][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.092][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:17.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:17.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.096][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:17.097][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:17.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.099][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:17.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:17.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.103][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:17.104][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:17.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:17.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:17.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.111][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.112][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.113][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.118][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:17.119][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:17.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.121][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.122][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:17.123][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:17.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.125][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.126][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:17.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:17.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.130][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.131][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.137][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:17.138][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:17.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.140][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.141][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:17.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:17.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.145][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:17.146][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:17.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.148][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.149][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:17.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:17.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.153][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:17.154][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:17.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.155][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.157][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:17.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:17.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:17.197][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2025-08-02 16:02:17.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:17.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:17.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:17.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:17.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:17.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:17.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:17.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:17.219][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2025-08-02 16:02:17.220][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:17.221][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:17.225][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml.
biodb.DEBUG[2025-08-02 16:02:17.226][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:17.227][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:17.228][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:17.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:17.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:17.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:17.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:17.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:17.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:17.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:17.240][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.241][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.243][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.248][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:17.249][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:17.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.250][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.252][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:17.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:17.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.255][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:17.256][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:17.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.258][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.264][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:17.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:17.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.269][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:17.270][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:17.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.271][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:17.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:17.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.276][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.277][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.279][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.284][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:17.285][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:17.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.287][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.288][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:17.289][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:17.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.291][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.292][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:17.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:17.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.295][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.296][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.298][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.303][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:17.304][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:17.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.306][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.307][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:17.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:17.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.311][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:17.311][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:17.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.313][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.314][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:17.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:17.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.318][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:17.319][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:17.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.321][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.322][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:17.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:17.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:17.362][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2025-08-02 16:02:17.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:17.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:17.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:17.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:17.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:17.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:17.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:17.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:17.384][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2025-08-02 16:02:17.385][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:17.386][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:17.391][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml.
biodb.DEBUG[2025-08-02 16:02:17.392][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:17.393][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:17.394][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:17.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:17.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:17.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:17.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:17.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:17.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:17.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:17.406][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.407][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.409][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.414][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:17.415][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:17.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.417][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.418][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:17.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:17.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.422][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:17.423][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:17.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.425][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.426][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:17.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:17.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.430][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:17.431][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:17.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.432][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:17.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:17.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.437][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.438][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.440][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.445][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:17.446][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:17.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.448][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.449][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:17.450][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:17.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.451][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.453][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:17.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:17.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.456][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.457][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.464][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:17.465][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:17.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.467][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:17.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:17.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.472][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:17.473][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:17.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.476][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:17.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:17.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.479][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:17.480][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:17.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.482][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.483][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:17.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:17.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:17.531][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2025-08-02 16:02:17.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:17.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:17.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:17.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:17.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:17.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:17.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:17.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:17.553][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2025-08-02 16:02:17.553][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:17.555][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:17.559][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml.
biodb.DEBUG[2025-08-02 16:02:17.560][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:17.561][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:17.562][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:17.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:17.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:17.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:17.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:17.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:17.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:17.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:17.574][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.575][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.577][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.582][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:17.583][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:17.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.584][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.586][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:17.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:17.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.589][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:17.590][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:17.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.592][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:17.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:17.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.597][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:17.598][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:17.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.599][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:17.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:17.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.604][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.605][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.607][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.612][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:17.613][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:17.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.614][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.616][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:17.617][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:17.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.618][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.619][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:17.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:17.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.623][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.624][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.626][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.631][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:17.632][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:17.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.634][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.635][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:17.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:17.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.639][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:17.640][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:17.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.641][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.643][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:17.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:17.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.646][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:17.647][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:17.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.649][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.650][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:17.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:17.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:17.691][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2025-08-02 16:02:17.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:17.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:17.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:17.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:17.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:17.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:17.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:17.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:17.713][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2025-08-02 16:02:17.714][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:17.715][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:17.719][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml.
biodb.DEBUG[2025-08-02 16:02:17.720][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:17.721][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:17.722][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:17.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:17.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:17.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:17.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:17.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:17.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:17.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:17.734][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.735][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.737][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.742][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:17.743][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:17.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.745][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.746][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:17.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:17.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.750][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:17.751][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:17.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.752][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.753][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:17.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:17.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.757][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:17.758][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:17.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.760][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:17.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:17.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.770][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.772][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.773][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.778][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:17.779][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:17.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.781][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.782][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:17.783][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:17.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.785][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.786][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:17.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:17.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.790][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.791][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.797][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:17.798][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:17.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.800][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:17.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:17.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.805][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:17.806][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:17.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.807][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.808][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:17.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:17.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.812][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:17.813][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:17.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.815][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:17.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:17.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:17.856][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2025-08-02 16:02:17.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:17.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:17.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:17.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:17.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:17.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:17.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:17.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:17.878][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2025-08-02 16:02:17.879][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:17.880][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:17.884][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml.
biodb.DEBUG[2025-08-02 16:02:17.885][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:17.886][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:17.887][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:17.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:17.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:17.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:17.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:17.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:17.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:17.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:17.899][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.900][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.902][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.906][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:17.907][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:17.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.909][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.910][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:17.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:17.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.914][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:17.915][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:17.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.917][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:17.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:17.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.922][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:17.923][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:17.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.924][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:17.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:17.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.929][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.930][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.932][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:17.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.937][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:17.938][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:17.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.940][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.941][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:17.942][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:17.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.945][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:17.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:17.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.948][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.949][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.951][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:17.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.956][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:17.957][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:17.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.959][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.960][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:17.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:17.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.964][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:17.965][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:17.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.966][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.968][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:17.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:17.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.971][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:17.972][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:17.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.974][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.975][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:17.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:17.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:17.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:17.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:17.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:17.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:17.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:18.021][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2025-08-02 16:02:18.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:18.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:18.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:18.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:18.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:18.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:18.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:18.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:18.043][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2025-08-02 16:02:18.044][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:18.045][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:18.049][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml.
biodb.DEBUG[2025-08-02 16:02:18.050][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:18.052][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:18.053][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:18.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:18.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:18.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:18.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:18.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:18.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:18.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:18.064][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.065][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.067][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.072][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:18.073][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:18.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.075][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.076][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:18.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:18.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.079][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:18.080][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:18.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.082][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.083][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:18.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:18.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.087][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:18.088][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:18.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.090][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:18.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:18.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.095][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.096][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.097][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.102][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:18.103][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:18.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.106][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:18.107][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:18.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.110][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:18.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:18.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.113][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.114][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.121][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:18.122][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:18.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.124][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:18.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:18.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.129][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:18.130][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:18.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.133][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:18.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:18.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.136][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:18.137][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:18.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:18.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:18.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:18.181][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2025-08-02 16:02:18.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:18.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:18.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:18.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:18.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:18.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:18.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:18.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:18.202][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2025-08-02 16:02:18.203][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:18.205][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:18.210][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml.
biodb.DEBUG[2025-08-02 16:02:18.211][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:18.212][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:18.213][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:18.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:18.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:18.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:18.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:18.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:18.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:18.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:18.225][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.226][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.228][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.233][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:18.234][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:18.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.236][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.237][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:18.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:18.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.240][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:18.241][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:18.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.243][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.244][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:18.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:18.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.248][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:18.249][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:18.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.251][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:18.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:18.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.256][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.257][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.259][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.273][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:18.274][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:18.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.276][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.278][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:18.279][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:18.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.280][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.282][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:18.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:18.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.286][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.287][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.288][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.293][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:18.294][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:18.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.296][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.297][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:18.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:18.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.301][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:18.302][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:18.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.304][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.305][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:18.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:18.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.309][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:18.310][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:18.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.312][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:18.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:18.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:18.353][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2025-08-02 16:02:18.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:18.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:18.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:18.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:18.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:18.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:18.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:18.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:18.374][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2025-08-02 16:02:18.375][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:18.377][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:18.380][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml.
biodb.DEBUG[2025-08-02 16:02:18.381][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:18.382][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:18.383][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:18.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:18.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:18.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:18.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:18.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:18.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:18.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:18.396][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.397][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.398][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.403][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:18.404][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:18.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.406][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.407][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:18.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:18.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.411][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:18.412][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:18.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.414][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.415][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:18.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:18.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.419][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:18.420][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:18.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.421][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:18.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:18.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.426][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.427][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.429][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.434][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:18.435][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:18.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.437][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.438][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:18.439][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:18.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.441][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.442][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:18.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:18.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.446][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.447][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.448][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.453][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:18.454][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:18.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.456][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.457][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:18.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:18.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.461][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:18.462][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:18.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.465][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:18.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:18.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.469][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:18.470][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:18.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.471][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:18.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:18.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:18.513][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2025-08-02 16:02:18.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:18.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:18.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:18.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:18.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:18.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:18.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:18.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:18.541][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2025-08-02 16:02:18.542][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:18.544][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:18.547][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml.
biodb.DEBUG[2025-08-02 16:02:18.548][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:18.549][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:18.550][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:18.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:18.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:18.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:18.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:18.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:18.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:18.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:18.562][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.563][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.569][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:18.570][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:18.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.572][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.573][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:18.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:18.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.577][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:18.578][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:18.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.580][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.581][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:18.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:18.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.585][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:18.586][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:18.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.587][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:18.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:18.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.592][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.593][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.595][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.600][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:18.601][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:18.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.603][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.604][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:18.605][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:18.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.606][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.608][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:18.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:18.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.611][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.612][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.614][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.619][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:18.620][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:18.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.622][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.623][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:18.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:18.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.627][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:18.628][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:18.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.629][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.631][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:18.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:18.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.634][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:18.635][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:18.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.637][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:18.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:18.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:18.680][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2025-08-02 16:02:18.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:18.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:18.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:18.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:18.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:18.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:18.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:18.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:18.701][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2025-08-02 16:02:18.702][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:18.703][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:18.707][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml.
biodb.DEBUG[2025-08-02 16:02:18.708][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:18.709][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:18.710][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:18.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:18.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:18.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:18.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:18.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:18.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:18.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:18.722][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.723][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.725][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.730][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:18.731][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:18.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.732][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.733][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:18.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:18.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.737][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:18.738][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:18.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.740][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.741][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:18.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:18.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.745][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:18.746][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:18.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.748][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:18.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:18.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.752][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.753][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.755][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.760][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:18.761][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:18.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.763][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.764][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:18.765][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:18.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.767][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.768][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:18.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:18.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.771][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.772][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.785][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:18.786][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:18.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.788][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:18.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:18.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.793][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:18.794][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:18.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.796][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.797][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:18.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:18.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.801][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:18.802][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:18.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.804][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:18.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:18.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:18.845][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2025-08-02 16:02:18.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:18.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:18.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:18.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:18.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:18.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:18.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:18.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:18.866][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2025-08-02 16:02:18.867][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:18.868][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:18.872][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml.
biodb.DEBUG[2025-08-02 16:02:18.873][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:18.874][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:18.875][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:18.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:18.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:18.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:18.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:18.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:18.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:18.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:18.887][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.888][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.890][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.894][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:18.895][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:18.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.897][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.898][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:18.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:18.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.902][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:18.903][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:18.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.905][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.906][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:18.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:18.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.910][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:18.911][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:18.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.913][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:18.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:18.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.917][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.918][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.920][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:18.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.925][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:18.926][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:18.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.928][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.929][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:18.930][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:18.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.932][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.933][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:18.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:18.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.937][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.938][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.939][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:18.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.944][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:18.945][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:18.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.947][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.948][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:18.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:18.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.952][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:18.953][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:18.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.955][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.956][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:18.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:18.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.960][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:18.961][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:18.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.962][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.963][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:18.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:18.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:18.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:18.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:18.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:18.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:18.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:19.004][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2025-08-02 16:02:19.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:19.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:19.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:19.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:19.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:19.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:19.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:19.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:19.032][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2025-08-02 16:02:19.033][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:19.034][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:19.038][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml.
biodb.DEBUG[2025-08-02 16:02:19.039][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:19.040][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:19.041][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:19.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:19.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:19.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:19.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:19.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:19.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:19.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:19.053][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.054][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.056][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.061][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:19.062][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:19.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.064][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.065][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:19.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:19.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.068][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:19.069][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:19.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.071][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:19.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:19.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.076][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:19.077][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:19.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.079][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:19.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:19.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.083][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:19.084][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:19.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.086][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:19.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:19.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.091][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:19.092][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:19.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.094][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.095][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:19.096][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:19.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.097][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.099][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:19.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:19.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.102][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.103][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.110][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:19.111][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:19.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.112][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.114][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:19.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:19.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.117][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:19.118][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:19.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.120][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.121][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:19.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:19.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.125][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:19.126][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:19.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.128][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.129][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:19.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:19.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:19.170][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2025-08-02 16:02:19.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:19.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:19.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:19.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:19.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:19.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:19.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:19.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:19.191][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2025-08-02 16:02:19.192][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:19.194][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:19.197][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml.
biodb.DEBUG[2025-08-02 16:02:19.198][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:19.199][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:19.200][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:19.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:19.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:19.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:19.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:19.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:19.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:19.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:19.212][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.213][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.215][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.220][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:19.221][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:19.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.222][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.223][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:19.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:19.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.227][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:19.228][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:19.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.230][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:19.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:19.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.235][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:19.236][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:19.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:19.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:19.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.242][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:19.243][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:19.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.245][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:19.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:19.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.250][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:19.251][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:19.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.253][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.254][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:19.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:19.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.258][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:19.259][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:19.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.260][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.261][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:19.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:19.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.265][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.266][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.268][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.273][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:19.274][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:19.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.281][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.282][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:19.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:19.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.287][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:19.288][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:19.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.289][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.291][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:19.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:19.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.294][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:19.295][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:19.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.297][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:19.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:19.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:19.338][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2025-08-02 16:02:19.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:19.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:19.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:19.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:19.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:19.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:19.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:19.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-02 16:02:19.360][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2025-08-02 16:02:19.360][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-02 16:02:19.362][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-02 16:02:19.365][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml.
biodb.DEBUG[2025-08-02 16:02:19.366][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-02 16:02:19.368][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-02 16:02:19.369][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-02 16:02:19.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:19.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:19.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:19.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:19.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:19.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:19.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:19.380][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.381][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.383][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.388][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:19.389][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:19.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.391][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.392][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:19.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:19.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.396][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:19.397][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:19.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.398][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.400][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:19.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:19.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.403][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:19.404][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:19.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.406][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:19.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:19.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.411][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:19.412][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:19.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.414][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:19.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:19.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.419][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:19.420][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:19.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.421][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.423][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:19.424][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:19.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.425][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.426][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-02 16:02:19.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:19.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.430][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.431][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.433][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.438][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:19.439][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:19.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.441][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.442][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:19.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:19.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.446][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:19.447][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:19.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.448][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.449][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-02 16:02:19.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:19.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.453][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:19.454][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:19.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.456][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:19.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:19.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:19.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:19.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:19.498][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2025-08-02 16:02:19.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:19.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:19.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:19.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:19.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:19.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:19.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:19.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:19.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:19.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:19.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:19.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:19.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:19.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:19.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:19.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:19.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:19.557][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:19.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:19.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:19.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:19.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:19.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:19.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:19.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:19.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.575][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.576][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:19.577][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:19.578][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:19.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.582][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.586][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.587][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.587][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.588][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.589][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.591][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.592][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:19.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.604][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-02 16:02:19.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:19.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:19.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:19.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:19.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:19.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:19.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:19.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.622][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.622][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:19.623][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:19.624][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:19.625][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.626][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.627][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.629][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.630][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.631][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.633][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.633][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.634][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.635][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.636][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.638][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.639][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:19.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-02 16:02:19.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:19.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:19.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:19.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:19.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:19.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:19.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:19.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.669][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.670][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:19.671][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:19.672][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:19.673][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.674][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.675][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.676][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.677][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.678][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.680][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.681][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.682][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.685][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.686][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:19.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.699][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-02 16:02:19.700][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:19.700][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:19.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:19.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:19.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:19.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:19.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:19.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:19.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:19.713][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:19.715][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:19.721][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-08-02 16:02:19.722][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:19.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:19.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:19.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:19.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:19.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:19.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:19.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:19.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:19.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:19.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:19.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:19.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:19.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:19.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:19.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:19.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:19.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:19.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:19.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:19.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:19.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:19.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:19.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:19.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:19.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:19.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:19.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:19.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:19.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:19.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:19.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:19.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:19.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:19.815][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:19.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:19.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:19.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:19.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:19.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:19.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:19.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:19.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.833][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.834][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:19.835][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:19.836][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:19.837][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.838][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.838][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.840][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.842][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.844][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.845][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.846][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.849][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.850][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:19.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.862][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-02 16:02:19.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:19.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:19.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:19.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:19.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:19.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:19.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:19.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.880][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.881][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:19.881][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:19.882][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:19.883][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.884][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.885][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.887][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.891][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.891][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.892][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.893][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.894][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.896][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.897][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:19.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.909][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-02 16:02:19.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:19.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:19.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:19.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:19.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:19.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:19.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:19.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.927][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.928][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:19.929][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:19.929][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:19.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.938][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.939][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.940][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:19.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.941][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.943][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.944][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:19.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:19.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:19.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:19.956][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-02 16:02:19.957][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:19.958][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:19.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:19.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:19.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:19.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:19.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:19.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:19.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:19.985][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:19.987][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:19.993][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-08-02 16:02:19.994][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:20.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:20.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:20.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:20.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:20.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:20.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:20.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:20.146][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:20.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.165][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:20.166][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:20.167][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:20.168][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.169][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.171][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.173][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.175][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.176][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.177][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.180][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.181][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:20.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.194][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-02 16:02:20.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.211][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.212][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:20.213][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:20.214][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:20.215][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.219][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.220][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.222][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.223][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.224][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.228][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.229][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:20.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.241][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-02 16:02:20.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.259][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.260][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:20.260][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:20.261][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:20.262][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.263][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.264][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.271][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.274][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.276][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.277][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.278][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.282][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.283][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:20.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.295][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-08-02 16:02:20.296][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:20.297][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:20.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:20.309][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:20.312][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:20.318][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/c90d0c20ab1b82ab9da517c0299e1056.content.
sched.DEBUG[2025-08-02 16:02:20.320][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:20.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:20.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:20.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:20.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:20.407][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:20.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.425][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.426][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:20.427][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:20.427][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:20.428][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.429][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.432][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.433][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.436][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.436][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.437][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.438][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.439][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.441][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.442][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:20.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.454][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-08-02 16:02:20.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.472][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.473][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:20.474][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:20.475][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:20.476][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.477][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.479][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.483][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.484][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.485][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.486][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.488][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.489][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:20.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.502][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-02 16:02:20.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.526][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.527][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:20.528][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:20.529][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:20.529][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.530][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.533][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.534][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.537][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.539][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.542][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.543][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:20.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.555][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-08-02 16:02:20.556][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:20.557][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:20.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:20.569][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:20.572][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:20.574][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/633ffa8aab56d260ba52bc860645ac89.content.
sched.DEBUG[2025-08-02 16:02:20.575][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:20.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:20.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:20.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:20.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:20.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:20.678][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:20.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.696][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.697][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:20.698][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:20.699][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:20.700][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.701][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.702][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.704][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.705][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.706][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.707][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.708][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.709][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.710][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.711][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.713][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.714][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:20.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.726][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-08-02 16:02:20.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.743][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.744][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:20.745][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:20.746][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:20.747][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.748][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.749][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.751][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.753][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.754][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.755][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.756][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.757][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.758][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.760][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.766][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:20.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.779][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-08-02 16:02:20.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.797][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.798][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:20.799][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:20.799][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:20.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.804][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.805][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.806][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.807][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.808][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.809][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.810][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.811][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.813][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.814][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:20.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.826][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-08-02 16:02:20.827][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:20.828][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:20.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:20.854][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:20.856][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:20.858][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-02 16:02:20.859][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-02 16:02:20.862][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:20.864][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:20.866][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-02 16:02:20.867][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:20.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:20.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:20.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:20.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:20.930][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:20.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.948][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.949][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:20.949][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:20.950][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:20.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.953][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.955][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.956][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.957][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.959][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.960][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.960][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.962][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.964][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.965][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:20.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.977][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-02 16:02:20.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:20.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:20.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:20.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:20.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:20.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:20.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:20.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:20.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:20.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:20.995][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.996][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:20.997][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:20.998][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:20.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:20.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.000][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.002][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.003][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.004][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.011][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.012][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.014][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.017][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.018][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:21.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.031][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-02 16:02:21.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.049][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.049][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:21.050][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:21.051][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:21.052][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.053][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.054][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.056][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.057][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.059][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.061][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.063][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.065][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.066][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:21.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.078][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-02 16:02:21.079][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:21.080][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:21.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:21.092][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:21.094][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:21.097][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-08-02 16:02:21.098][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:21.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:21.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:21.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:21.162][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:21.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.181][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.182][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:21.182][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:21.183][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:21.184][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.186][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.188][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.189][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.192][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.193][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.197][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.198][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:21.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.210][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-02 16:02:21.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.228][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.229][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:21.230][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:21.231][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:21.232][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.235][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.239][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.241][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.242][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.244][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.245][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:21.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.264][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-02 16:02:21.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.282][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.283][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:21.284][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:21.284][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:21.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.289][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.291][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.293][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.293][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.294][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.296][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.298][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.299][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:21.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-02 16:02:21.312][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:21.313][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:21.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:21.325][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:21.327][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:21.331][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-02 16:02:21.332][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:21.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:21.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:21.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:21.396][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:21.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.415][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:21.416][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:21.417][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:21.418][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.419][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.420][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.421][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.425][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.426][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.427][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.428][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.431][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.431][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:21.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.444][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-02 16:02:21.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.461][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.462][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:21.463][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:21.464][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:21.465][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.466][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.467][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.469][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.469][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.470][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.472][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.473][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.474][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.476][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.478][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.479][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:21.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.491][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-08-02 16:02:21.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.515][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.515][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:21.516][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:21.517][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:21.518][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.520][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.522][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.523][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.524][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.525][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.526][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.527][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.531][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.532][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:21.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.544][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-08-02 16:02:21.545][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:21.546][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:21.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:21.572][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:21.575][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:21.579][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/76cb051f1eabf309f608d38ca52ffd0b.content.
sched.DEBUG[2025-08-02 16:02:21.580][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:21.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:21.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:21.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:21.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:21.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:21.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:21.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:21.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:21.751][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:21.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.770][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.771][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:21.771][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:21.772][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:21.773][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.774][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.775][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.780][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.782][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.783][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.784][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.786][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.787][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:21.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.799][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-02 16:02:21.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.816][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.817][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:21.818][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:21.819][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:21.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.820][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.823][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.825][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.827][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.828][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.829][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.829][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.830][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.832][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.833][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:21.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.845][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-02 16:02:21.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.863][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.864][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:21.865][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:21.866][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:21.867][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.868][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.869][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.870][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.874][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.875][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.876][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:21.877][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.881][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:21.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:21.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.893][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-02 16:02:21.894][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:21.895][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:21.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:21.907][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:21.910][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:21.916][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/3d37e3be2f5c6d64498effb7934e924b.content.
sched.DEBUG[2025-08-02 16:02:21.917][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:21.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:21.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:21.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:21.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:21.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:21.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:21.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:21.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:21.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:21.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:21.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:21.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:21.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:21.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.548][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:22.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.567][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:22.568][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:22.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:22.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.571][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.572][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.573][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.577][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.579][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.580][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.581][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.583][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.583][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:22.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.596][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-08-02 16:02:22.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.614][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.614][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:22.615][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:22.616][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:22.617][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.618][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.619][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.621][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.622][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.623][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.625][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.625][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.626][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.627][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.628][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.630][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.631][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:22.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.643][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-08-02 16:02:22.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.661][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.662][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:22.663][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:22.664][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:22.665][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.666][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.667][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.668][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.669][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.673][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.674][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.677][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.678][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:22.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.691][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-08-02 16:02:22.692][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:22.693][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:22.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:22.705][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:22.707][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:22.714][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-08-02 16:02:22.715][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:22.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:22.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:22.807][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:22.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.825][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.826][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:22.827][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:22.828][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:22.829][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.830][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.831][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.832][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.833][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.834][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.836][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.837][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.838][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.839][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.842][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.842][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:22.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.855][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-08-02 16:02:22.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.873][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.874][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:22.874][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:22.875][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:22.876][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.877][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.882][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.884][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.884][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.885][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.889][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.890][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:22.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.902][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-08-02 16:02:22.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:22.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:22.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:22.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:22.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:22.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:22.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:22.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.921][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:22.922][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:22.923][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:22.924][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.925][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.926][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.927][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.931][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.933][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-02 16:02:22.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.936][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.937][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-02 16:02:22.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:22.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.950][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-08-02 16:02:22.951][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:22.951][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-02 16:02:22.972][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-02 16:02:22.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-02 16:02:22.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.976][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-02 16:02:22.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-02 16:02:22.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.980][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-02 16:02:22.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-02 16:02:22.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-02 16:02:22.986][biodb::testThat]
biodb.INFO [2025-08-02 16:02:22.987][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-08-02 16:02:22.988][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-02 16:02:22.989][biodb::testThat]
biodb.TRACE[2025-08-02 16:02:22.991][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-02 16:02:22.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-02 16:02:22.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.995][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-02 16:02:22.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-02 16:02:22.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:22.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:22.999][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-02 16:02:22.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-02 16:02:23.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:23.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:23.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:23.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:23.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:23.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:23.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:23.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:23.059][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:23.061][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:23.063][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-02 16:02:23.064][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:23.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:23.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:23.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:23.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:23.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:23.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:23.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:23.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:02:23.087][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:23.089][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:23.091][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-02 16:02:23.092][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:23.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:23.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:23.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:23.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:23.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:23.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:23.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:23.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:23.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:23.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:23.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:23.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:23.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:23.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:23.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:23.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:23.135][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:23.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:23.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:23.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:23.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:23.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:23.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:23.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:23.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:23.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:23.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:23.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:23.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.153][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:23.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:23.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.157][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:23.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:23.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:23.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:23.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:23.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:23.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:23.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:23.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:23.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:23.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.190][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.194][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.219][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.222][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:23.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:23.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:23.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:23.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.233][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:23.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:23.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:23.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:23.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.241][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:23.242][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:23.242][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:23.243][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:23.244][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:23.245][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:23.246][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:23.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.248][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.249][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:23.250][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:23.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.251][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.252][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.253][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.255][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.256][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:23.257][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:23.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.258][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.259][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:23.260][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:23.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.262][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.263][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.264][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.266][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.267][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.268][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.269][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.270][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.271][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.273][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.274][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.275][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.276][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.277][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.278][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.280][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.281][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:23.282][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:23.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.284][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.284][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:23.285][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:23.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.287][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.288][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:23.289][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:23.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.291][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.292][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:23.293][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:23.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.294][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.296][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.298][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.299][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:23.300][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:23.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.302][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.303][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:23.304][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:23.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.305][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.306][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.307][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.309][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.310][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.311][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.313][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.313][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.314][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.316][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.317][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.318][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.320][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.321][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.322][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.324][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.324][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:23.325][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:23.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.327][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.328][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:23.329][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:23.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.331][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.332][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:23.333][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:23.334][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:23.335][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:23.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.336][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.337][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:23.338][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:23.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.340][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.341][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.342][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.344][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.345][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:23.346][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:23.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.347][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.348][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:23.349][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:23.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.352][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.353][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.355][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.355][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.356][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.358][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.359][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.362][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.363][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.364][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.366][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.366][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:23.367][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:23.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.369][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.370][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:23.371][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:23.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.373][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.374][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:23.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:23.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:23.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:23.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:23.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:23.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:23.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.386][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:23.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:23.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.390][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:23.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:23.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.394][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:23.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:23.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.409][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:23.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:23.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.412][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:23.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:23.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.416][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:23.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:23.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:23.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:23.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:23.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:23.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:23.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:23.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.618][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.621][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.625][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:23.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:23.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:23.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:23.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:23.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:23.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:23.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:23.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:23.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:23.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:23.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:23.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.657][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-08-02 16:02:23.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:23.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:23.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:23.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:23.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:23.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:23.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:23.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:23.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:23.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:23.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:23.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.675][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:23.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:23.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.678][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:23.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:23.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.689][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:23.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:23.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.693][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:23.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:23.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:23.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:23.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:23.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:23.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.711][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.714][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.732][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.736][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:23.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:23.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:23.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:23.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:23.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:23.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.751][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:23.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:23.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.754][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:23.755][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:23.756][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:23.757][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:23.758][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:23.759][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:23.760][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:23.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.762][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.763][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:23.764][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:23.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.765][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.766][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.767][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.769][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.770][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:23.771][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:23.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.773][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.774][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:23.775][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:23.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.776][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.777][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.778][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.780][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.781][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.782][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.784][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.785][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.786][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.787][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.788][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.789][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.791][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.792][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.793][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.795][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.796][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:23.797][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:23.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.798][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.799][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:23.800][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:23.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.802][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.803][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:23.804][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:23.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.806][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.807][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:23.808][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:23.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.809][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.810][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.811][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.813][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.814][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:23.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:23.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.817][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.818][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:23.819][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:23.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.820][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.821][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.822][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.824][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.825][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.826][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.828][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.829][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.830][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.831][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.832][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.833][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.835][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.836][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.837][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.839][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.840][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:23.841][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:23.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.842][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.843][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:23.844][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:23.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.849][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.850][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:23.851][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:23.852][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:23.853][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:23.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.855][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.856][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:23.857][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:23.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.858][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.860][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.862][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.863][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:23.864][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:23.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.865][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.866][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:23.867][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:23.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.869][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.870][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.871][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.872][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.873][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.874][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.876][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.877][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.878][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.880][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.881][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.883][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.884][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.885][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.887][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.888][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:23.889][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:23.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.890][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.891][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:23.892][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:23.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.894][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.895][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:23.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:23.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:23.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:23.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:23.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:23.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:23.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.907][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:23.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:23.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.910][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:23.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:23.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.914][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:23.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:23.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:23.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:23.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:23.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.932][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:23.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:23.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.936][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:23.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:23.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:23.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:23.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:23.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:23.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:23.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:23.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:23.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.962][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.965][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.969][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:23.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:23.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:23.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.995][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:23.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:23.998][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:23.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.002][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:24.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:24.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:24.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:24.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.013][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:24.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:24.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.017][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:24.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:24.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.021][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:24.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:24.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:24.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:24.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.034][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-08-02 16:02:24.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:24.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:24.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:24.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:24.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:24.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:24.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:24.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:24.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:24.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:24.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:24.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.051][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:24.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:24.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.055][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:24.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:24.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:24.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:24.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:24.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:24.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:24.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:24.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:24.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:24.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.088][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.091][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.113][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.116][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:24.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:24.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:24.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:24.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:24.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:24.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:24.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:24.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.134][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:24.135][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:24.136][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:24.137][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:24.138][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:24.139][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:24.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:24.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.142][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.142][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:24.143][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:24.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.145][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.146][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.147][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.149][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.150][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:24.151][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:24.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.152][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.153][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:24.154][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:24.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.156][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.157][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.158][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.159][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.160][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.161][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.163][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.164][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.165][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.166][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.167][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.168][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.170][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.171][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.172][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.174][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.174][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:24.175][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:24.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.177][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.178][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:24.179][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:24.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.181][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.182][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:24.183][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:24.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.184][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.185][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:24.186][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:24.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.188][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.189][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.191][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.192][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:24.193][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:24.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.195][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.196][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:24.197][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:24.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.199][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.199][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.200][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.202][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.203][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.204][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.206][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.207][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.208][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.209][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.210][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.211][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.213][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.214][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.215][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.216][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.217][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:24.218][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:24.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.220][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.221][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:24.222][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:24.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.224][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.225][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:24.226][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:24.226][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:24.227][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:24.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.229][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.230][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:24.231][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:24.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.233][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.236][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.237][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:24.238][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:24.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.240][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.241][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:24.242][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:24.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.244][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.245][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.246][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.247][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.248][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.249][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.251][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.252][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.253][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.255][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.255][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.256][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.258][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.259][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:24.260][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:24.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.262][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.263][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:24.264][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:24.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.265][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.266][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:24.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:24.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:24.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:24.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:24.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:24.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:24.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.279][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:24.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:24.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.282][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:24.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:24.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.286][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:24.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:24.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.301][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:24.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:24.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.304][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:24.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:24.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.308][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:24.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:24.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:24.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:24.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:24.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:24.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:24.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:24.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.360][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.363][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.367][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:24.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:24.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:24.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:24.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:24.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:24.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.381][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:24.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:24.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:24.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:24.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.388][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:24.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:24.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.397][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-08-02 16:02:24.398][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:24.399][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:24.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:24.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:24.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:24.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:24.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:24.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:24.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:24.412][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:24.414][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:24.416][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-02 16:02:24.417][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:24.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:24.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:24.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:24.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:24.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:24.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:24.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:24.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:24.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:24.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:24.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:24.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:24.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:24.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:24.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:24.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:02:24.460][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:24.462][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:24.465][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-02 16:02:24.466][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:24.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:24.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:24.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:24.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:24.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:24.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:24.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:24.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:24.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:24.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:24.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:24.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:24.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:24.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:24.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:24.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:24.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:24.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:24.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:24.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:24.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:24.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:24.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:24.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:24.528][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:24.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:24.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:24.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:24.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:24.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:24.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:24.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:24.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:24.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:24.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:24.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:24.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.546][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:24.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:24.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.550][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:24.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:24.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:24.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:24.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.564][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:24.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:24.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:24.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:24.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:24.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:24.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.583][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.586][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.608][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.612][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:24.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:24.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:24.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:24.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.622][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:24.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:24.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.626][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:24.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:24.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.630][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:24.630][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:24.631][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:24.632][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:24.633][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:24.634][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:24.635][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:24.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.637][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.637][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:24.638][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:24.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.641][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.642][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.644][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.645][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:24.646][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:24.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.647][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.648][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:24.649][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:24.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.651][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.652][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.653][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.654][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.655][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.656][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.658][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.659][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.660][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.662][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.662][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.663][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.666][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.667][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.669][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.669][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:24.670][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:24.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.673][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:24.674][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:24.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.676][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.677][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:24.678][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:24.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.679][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.680][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:24.681][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:24.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.683][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.686][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.687][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:24.688][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:24.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.691][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:24.692][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:24.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.694][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.694][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.695][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.697][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.698][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.699][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.701][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.702][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.703][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.704][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.705][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.706][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.708][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.709][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.710][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.712][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:24.713][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:24.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.715][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.716][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:24.717][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:24.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.718][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.719][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:24.720][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:24.721][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:24.722][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:24.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.724][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.725][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:24.726][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:24.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.727][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.728][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.729][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.731][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.732][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:24.733][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:24.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.735][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.736][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:24.737][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:24.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.738][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.739][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.740][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.742][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.743][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.744][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.746][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.746][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.747][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.749][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.750][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.751][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.753][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.754][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.755][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.756][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.757][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:24.758][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:24.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.760][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.761][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:24.762][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:24.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.764][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.764][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:24.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:24.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:24.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:24.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:24.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:24.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:24.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.777][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:24.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:24.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.780][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:24.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:24.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.784][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:24.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:24.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:24.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:24.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.802][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:24.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:24.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.806][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:24.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:24.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:24.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:24.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:24.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:24.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:24.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:24.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.832][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.839][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.842][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:24.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.878][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.882][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.886][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:24.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:24.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:24.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:24.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:24.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:24.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:24.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:24.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:24.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:24.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:24.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:24.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:24.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.922][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-08-02 16:02:24.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:24.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:24.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:24.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:24.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:24.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:24.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:24.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:24.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:24.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:24.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:24.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.944][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:24.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:24.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.948][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:24.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:24.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:24.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.960][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:24.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:24.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:24.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:24.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:24.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:24.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:24.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:24.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:24.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.985][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.989][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:24.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:24.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:24.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:24.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.010][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.014][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:25.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:25.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:25.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:25.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.026][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:25.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:25.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:25.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:25.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.034][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:25.035][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:25.036][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:25.037][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:25.038][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:25.039][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:25.040][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:25.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.042][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.043][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:25.044][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:25.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.046][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.046][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.049][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.050][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:25.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:25.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.053][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.054][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:25.055][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:25.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.057][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.058][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.059][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.061][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.062][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:25.063][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:25.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.065][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.066][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.067][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.069][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.070][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.071][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.073][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.074][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.075][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.077][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.078][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:25.079][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:25.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.081][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.082][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:25.083][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:25.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.085][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.086][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:25.087][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:25.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.089][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.090][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:25.091][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:25.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.093][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.094][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.097][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.098][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:25.099][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:25.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.101][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.102][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:25.103][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:25.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.106][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.107][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.110][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:25.111][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:25.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.113][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.114][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.125][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.127][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.128][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.129][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.131][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.131][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.132][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.134][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.135][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:25.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:25.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.138][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.139][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:25.140][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:25.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.142][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.142][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:25.143][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:25.144][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:25.145][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:25.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.147][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.148][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:25.149][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:25.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.151][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.154][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.155][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:25.156][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:25.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.158][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:25.159][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:25.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.161][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.162][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.163][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.165][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.166][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:25.166][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:25.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.169][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.170][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.173][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.174][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.175][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.176][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.177][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.179][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.180][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:25.181][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:25.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.182][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.183][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:25.184][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:25.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.186][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.187][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:25.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:25.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:25.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:25.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:25.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:25.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:25.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.199][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:25.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:25.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.202][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:25.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:25.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.206][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:25.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:25.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:25.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:25.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.224][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:25.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:25.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:25.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:25.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:25.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:25.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:25.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:25.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:25.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:25.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.250][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.253][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:25.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:25.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.257][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:25.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:25.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.261][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:25.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:25.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.287][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.291][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.294][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:25.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:25.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.302][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:25.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:25.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.305][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:25.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:25.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:25.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:25.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:25.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:25.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.316][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:25.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:25.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.326][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-08-02 16:02:25.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:25.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:25.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:25.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:25.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:25.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:25.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:25.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:25.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:25.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:25.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:25.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.344][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:25.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:25.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.347][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:25.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:25.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:25.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:25.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.362][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:25.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:25.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:25.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:25.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:25.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:25.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.384][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:25.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:25.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.387][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:25.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:25.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.405][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.409][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:25.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:25.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.416][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:25.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:25.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.420][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:25.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:25.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:25.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:25.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.427][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:25.428][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:25.429][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:25.429][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:25.430][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:25.431][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:25.432][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:25.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.434][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.435][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:25.436][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:25.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.437][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.438][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.439][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.441][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.442][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:25.443][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:25.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.445][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.446][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:25.446][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:25.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.448][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.449][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.450][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.452][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.453][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:25.454][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:25.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.455][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.456][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.457][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.460][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.461][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.462][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.463][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.464][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.467][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:25.468][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:25.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.469][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.470][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:25.471][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:25.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.474][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:25.475][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:25.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.478][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:25.479][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:25.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.481][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.485][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:25.486][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:25.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.488][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:25.489][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:25.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.491][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.492][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.493][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.495][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.495][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:25.496][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:25.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.498][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.499][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.500][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.503][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.504][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.505][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.506][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.507][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.509][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.510][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:25.511][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:25.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.513][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.514][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:25.514][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:25.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.516][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.517][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:25.518][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:25.519][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:25.520][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:25.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.522][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.523][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:25.524][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:25.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.525][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.526][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.527][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.529][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.530][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:25.531][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:25.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.533][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.534][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:25.534][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:25.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.536][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.537][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.538][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.540][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.541][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.542][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.543][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.544][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.545][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.547][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.548][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.549][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.551][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.552][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:25.553][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:25.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.554][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.555][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:25.556][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:25.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.558][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.559][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:25.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:25.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:25.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:25.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:25.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:25.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:25.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.571][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:25.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:25.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.575][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:25.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:25.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.579][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:25.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:25.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.594][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:25.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:25.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:25.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:25.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:25.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:25.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:25.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:25.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:25.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:25.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:25.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:25.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:25.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.652][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.656][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.660][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:25.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:25.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:25.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:25.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:25.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.671][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:25.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:25.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:25.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:25.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:25.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:25.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:25.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:25.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.691][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-08-02 16:02:25.692][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:25.693][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:25.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:25.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:25.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:25.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:25.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:25.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:25.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:25.706][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:25.709][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:25.711][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-08-02 16:02:25.712][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:25.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:25.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:25.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:25.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:25.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:25.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:25.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:25.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:25.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:25.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:25.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:25.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:25.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:25.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:25.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:25.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:25.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:25.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:25.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:25.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:25.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:25.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:25.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:25.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:25.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:25.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:25.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:25.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:25.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:25.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:25.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:25.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:25.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:25.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:25.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:25.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:25.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:25.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:25.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:25.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:25.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:25.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:25.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:25.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:25.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:25.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:25.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:25.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:25.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:25.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:25.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:25.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:25.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:25.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:25.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:25.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:25.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:25.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:25.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:25.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:25.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:25.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:25.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:25.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:02:25.879][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:25.881][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:25.883][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-02 16:02:25.884][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:25.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:25.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:25.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:25.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:25.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:25.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:25.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:25.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:25.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:25.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:25.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:25.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:25.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:25.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:25.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:25.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:25.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:25.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:25.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:25.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:25.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:25.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:25.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:25.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:25.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:25.946][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:25.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:25.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:25.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:25.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:25.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:25.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:25.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:25.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:25.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:25.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:25.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:25.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.963][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:25.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:25.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.967][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:25.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:25.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:25.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:25.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:25.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:25.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:25.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:25.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:25.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:25.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:25.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:25.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:25.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:25.999][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.003][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.021][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.025][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.043][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:26.044][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:26.045][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:26.046][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:26.047][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:26.048][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.049][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.051][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.052][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.054][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.055][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.056][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.058][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.059][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.060][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.061][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.062][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.063][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.065][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.066][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.067][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.069][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.070][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.070][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.072][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.073][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.074][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.076][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.077][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.078][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.079][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.080][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.081][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.083][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.084][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.085][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.088][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.088][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.090][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.091][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.092][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.094][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.095][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.096][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.101][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.102][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.103][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.106][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.107][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.108][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.113][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.114][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.117][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.118][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.119][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.120][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.121][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.123][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.124][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.125][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.126][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.127][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.128][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.130][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.131][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.132][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.133][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.134][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.135][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.137][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.138][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:26.139][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:26.140][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.141][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.142][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.143][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.144][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.146][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.149][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.150][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.151][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.153][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.154][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.155][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.157][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.157][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.158][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.160][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.161][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.162][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.164][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.165][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.166][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.167][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.168][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.169][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.171][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.172][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.173][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.174][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.175][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.176][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.178][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.179][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.180][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.182][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.182][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:26.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.195][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.198][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.202][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.216][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.220][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.224][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.250][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.253][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.257][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.283][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.287][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.290][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.322][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-08-02 16:02:26.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:26.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:26.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:26.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:26.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:26.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:26.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:26.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.340][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.343][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.361][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.379][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.383][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.401][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.405][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.416][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.419][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.423][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:26.424][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:26.425][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:26.425][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:26.426][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:26.427][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.428][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.430][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.431][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.432][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.433][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.437][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.438][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.439][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.441][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.441][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.442][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.444][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.445][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.446][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.448][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.449][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.450][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.451][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.452][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.453][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.455][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.456][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.457][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.459][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.460][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.462][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.463][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.464][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.467][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.468][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.469][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.470][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.471][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.474][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.475][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.477][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.478][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.481][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.482][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.485][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.486][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.488][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.489][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.491][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.492][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.493][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.495][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.496][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.497][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.498][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.499][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.500][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.503][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.504][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.506][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.507][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.508][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.510][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.510][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.511][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.513][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.514][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:26.515][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:26.516][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.517][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.519][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.520][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.521][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.522][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.523][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.524][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.526][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.527][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.528][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.530][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.531][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.532][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.533][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.534][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.535][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.537][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.538][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.539][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.541][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.542][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.543][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.544][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.545][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.546][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.548][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.549][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.550][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.552][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.553][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.554][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.555][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.556][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:26.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.569][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.572][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.576][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.591][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.598][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.650][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.653][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.657][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.661][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.668][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.672][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.688][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-08-02 16:02:26.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:26.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:26.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:26.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:26.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:26.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:26.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:26.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.706][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.709][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.724][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.742][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.746][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.765][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.768][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.772][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.783][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.787][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:26.788][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:26.789][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:26.790][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:26.790][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:26.791][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.794][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.795][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.796][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.798][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.799][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.800][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.801][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.802][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.803][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.805][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.806][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.807][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.809][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.810][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.811][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.812][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.813][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.814][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.816][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.817][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.818][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.820][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.821][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.822][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.823][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.824][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.825][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.827][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.828][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.829][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.830][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.831][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.832][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.834][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.835][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.836][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.838][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.839][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.840][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.841][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.842][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.843][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.845][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.846][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.847][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.852][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.853][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.854][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.856][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.857][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.857][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.859][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.860][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.861][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:26.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.863][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.864][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.865][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.866][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.867][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.868][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.870][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.871][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.872][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.873][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.874][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.875][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.877][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.878][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.879][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.881][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.881][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:26.882][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:26.883][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.884][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.886][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.887][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.888][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.889][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.890][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.891][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.893][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.894][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.895][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.897][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.897][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.898][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.900][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.901][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.902][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.904][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.905][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.906][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.907][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.908][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.909][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:26.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.911][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.912][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.913][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:26.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.914][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.915][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:26.916][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:26.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.918][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.919][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:26.920][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:26.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.922][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.922][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:26.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:26.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:26.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.934][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.938][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.942][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:26.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:26.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:26.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.956][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.960][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:26.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:26.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:26.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:26.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:26.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:26.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:26.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:26.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.012][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.015][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.019][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:27.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:27.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:27.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:27.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.030][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:27.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:27.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:27.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:27.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:27.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:27.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.041][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:27.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:27.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.050][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-08-02 16:02:27.051][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:27.052][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:27.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:27.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:27.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:27.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:27.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:27.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:27.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:27.070][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:27.072][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:27.074][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-02 16:02:27.075][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:27.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:27.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:27.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:27.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:27.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:27.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:27.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:27.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:02:27.101][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:27.103][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:27.105][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-02 16:02:27.106][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:27.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:27.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:27.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:27.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:27.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:27.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:27.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:27.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:27.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:27.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:27.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:27.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:27.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:27.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:27.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:27.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:27.148][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:27.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:27.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:27.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:27.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:27.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:27.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:27.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:27.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:27.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:27.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:27.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:27.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.166][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:27.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:27.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.170][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:27.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:27.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.181][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:27.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:27.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:27.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:27.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:27.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:27.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:27.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:27.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.203][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.206][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.224][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.228][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:27.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:27.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.235][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:27.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:27.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:27.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:27.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.243][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:27.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:27.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.246][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:27.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:27.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.250][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:27.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:27.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.254][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:27.255][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:27.256][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:27.256][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:27.257][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:27.258][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:27.259][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:27.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.261][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.262][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:27.263][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:27.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.265][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.268][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.269][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:27.270][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:27.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.272][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.273][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:27.274][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:27.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.275][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.276][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.277][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.279][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.280][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.281][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.283][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.283][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.284][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.286][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.287][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.288][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.290][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.291][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.292][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.293][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.294][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:27.295][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:27.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.297][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.298][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:27.299][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:27.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.301][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.302][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:27.303][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:27.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.304][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.305][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:27.306][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:27.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.309][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:27.310][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:27.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.312][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.313][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.316][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:27.317][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:27.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.319][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.320][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:27.321][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:27.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.322][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.323][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.324][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.326][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.327][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.328][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.330][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.331][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.331][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.334][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.335][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.337][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.338][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.339][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.344][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.345][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:27.346][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:27.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.348][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.349][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:27.350][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:27.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.352][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:27.353][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:27.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.355][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.356][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:27.357][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:27.358][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:27.359][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:27.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.360][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.361][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:27.362][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:27.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.364][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.367][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.368][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:27.369][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:27.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.371][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.372][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:27.373][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:27.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.374][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.375][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.376][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.378][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.379][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.380][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.382][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.382][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.383][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.385][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.386][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.387][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.389][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.390][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:27.391][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:27.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.393][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:27.394][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:27.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.396][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.397][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:27.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:27.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:27.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:27.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:27.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:27.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:27.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.409][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:27.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:27.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.412][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:27.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:27.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.416][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:27.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:27.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.431][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:27.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:27.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.434][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:27.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:27.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.438][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:27.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:27.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:27.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:27.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:27.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:27.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:27.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:27.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.486][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.490][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.493][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.497][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:27.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:27.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.501][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:27.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:27.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.504][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:27.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:27.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:27.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:27.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:27.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:27.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:27.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:27.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.524][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-08-02 16:02:27.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:27.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:27.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:27.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:27.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:27.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:27.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:27.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:27.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:27.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:27.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:27.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.542][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:27.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:27.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.546][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:27.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:27.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.557][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:27.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:27.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.560][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:27.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:27.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:27.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:27.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:27.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:27.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.579][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.583][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.604][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.608][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:27.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:27.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:27.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:27.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.618][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:27.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:27.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.622][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:27.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:27.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.626][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:27.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:27.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.629][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:27.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:27.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.633][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:27.634][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:27.635][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:27.635][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:27.636][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:27.637][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:27.638][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:27.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.641][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:27.642][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:27.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.643][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.644][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.645][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.647][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.648][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:27.649][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:27.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.651][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.652][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:27.652][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:27.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.654][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.655][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.656][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.658][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.659][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.660][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.661][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.662][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.663][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.666][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.667][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.668][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.669][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.670][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.673][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:27.674][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:27.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.676][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.676][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:27.677][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:27.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.679][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.680][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:27.681][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:27.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.683][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.684][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:27.685][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:27.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.686][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.687][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:27.688][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:27.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.692][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.693][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.694][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:27.695][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:27.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.697][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.698][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:27.699][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:27.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.701][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.701][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.702][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.704][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.705][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.706][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.708][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.709][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.710][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.712][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.713][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.715][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.716][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.717][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.718][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.719][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:27.720][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:27.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.722][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.723][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:27.724][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:27.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.726][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.727][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:27.728][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:27.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.729][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.730][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:27.731][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:27.732][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:27.733][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:27.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.735][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.736][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:27.737][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:27.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.738][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.740][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.742][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.743][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:27.744][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:27.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.746][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.747][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:27.748][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:27.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.749][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.750][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.751][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.753][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.754][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.755][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.757][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.757][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.758][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.760][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.761][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.762][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.764][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.765][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.766][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.767][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.768][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:27.769][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:27.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.771][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.772][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:27.773][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:27.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.776][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:27.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:27.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:27.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:27.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:27.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:27.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:27.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.788][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:27.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:27.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.791][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:27.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:27.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.795][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:27.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:27.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:27.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:27.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.813][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:27.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:27.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:27.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:27.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:27.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:27.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:27.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:27.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:27.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:27.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.846][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.850][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.854][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.879][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.883][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.886][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:27.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:27.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:27.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:27.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:27.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:27.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.901][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:27.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:27.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:27.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:27.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:27.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:27.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.917][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-08-02 16:02:27.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:27.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:27.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:27.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:27.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:27.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:27.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:27.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:27.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:27.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:27.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:27.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.935][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:27.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:27.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.939][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:27.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:27.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:27.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.949][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:27.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:27.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.953][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:27.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:27.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:27.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:27.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:27.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:27.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:27.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.971][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.975][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:27.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:27.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:27.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.993][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:27.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:27.997][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:27.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:28.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:28.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:28.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:28.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.008][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:28.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:28.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.011][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:28.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:28.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.015][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.019][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.022][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:28.023][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:28.024][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:28.025][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:28.026][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:28.027][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:28.028][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:28.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.029][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.030][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:28.031][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:28.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.033][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.037][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.038][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:28.039][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:28.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.040][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.041][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:28.042][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:28.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.044][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.045][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.046][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.048][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.048][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.049][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.052][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.053][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.055][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.056][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.057][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.058][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.059][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.060][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.062][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.063][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:28.064][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:28.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.066][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.066][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:28.067][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:28.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.069][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.070][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.075][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.076][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.077][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:28.078][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:28.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.080][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.081][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:28.082][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:28.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.083][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.088][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:28.089][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:28.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.091][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.091][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:28.092][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:28.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.094][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.095][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.096][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.099][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.100][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.101][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.102][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.103][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.106][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.107][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.108][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.109][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.110][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.112][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.113][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:28.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:28.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.115][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.116][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:28.117][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:28.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.119][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.120][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.121][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.123][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.124][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:28.124][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:28.125][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:28.126][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:28.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.128][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.129][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:28.130][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:28.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.133][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.135][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.136][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:28.137][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:28.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.140][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:28.141][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:28.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.142][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.143][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.144][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.146][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.147][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.148][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.149][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.150][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.151][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.153][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.154][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.155][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.156][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.157][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:28.158][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:28.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.160][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.161][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:28.162][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:28.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.164][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.165][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:28.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:28.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:28.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:28.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:28.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:28.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:28.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.176][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:28.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:28.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.180][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:28.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:28.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.184][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:28.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:28.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:28.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:28.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.202][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:28.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:28.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.206][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:28.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:28.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:28.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:28.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:28.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:28.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:28.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:28.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.254][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.258][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.261][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:28.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:28.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:28.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:28.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:28.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:28.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.276][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:28.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:28.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.280][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:28.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:28.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.283][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:28.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:28.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.292][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-08-02 16:02:28.293][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:28.294][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:28.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:28.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:28.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:28.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:28.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:28.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:28.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:28.308][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:28.310][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:28.312][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-08-02 16:02:28.313][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:28.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:28.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:28.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:28.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:28.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:28.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:28.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:28.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:28.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:28.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:28.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:28.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:28.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:28.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:28.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:28.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:02:28.360][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:28.362][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:28.365][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-08-02 16:02:28.366][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:28.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:28.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:28.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:28.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:28.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:28.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:28.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:28.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:28.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:28.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:28.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:28.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:28.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:28.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:28.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:28.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:28.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:28.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:28.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:28.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:28.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:28.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:28.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:28.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:28.428][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:28.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:28.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:28.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:28.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:28.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:28.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:28.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:28.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:28.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:28.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:28.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:28.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.446][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:28.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:28.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.449][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:28.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:28.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.460][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:28.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:28.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.464][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:28.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:28.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:28.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:28.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:28.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:28.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.482][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.486][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.504][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.508][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:28.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:28.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.515][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:28.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:28.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.519][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:28.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:28.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.523][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:28.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:28.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.526][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.530][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.534][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:28.534][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:28.535][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:28.536][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:28.537][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:28.538][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:28.539][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:28.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.541][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.542][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:28.543][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:28.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.544][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.545][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.546][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.548][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.549][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:28.550][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:28.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.552][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.552][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:28.553][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:28.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.555][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.556][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.557][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.559][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.560][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.561][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.566][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.567][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.568][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.570][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.571][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.572][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.573][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.574][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.575][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.577][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.578][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:28.579][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:28.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.581][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.581][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:28.582][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:28.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.584][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.585][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.586][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.588][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.589][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:28.590][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:28.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.591][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.592][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:28.593][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:28.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.595][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.596][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.597][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.598][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.599][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:28.600][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:28.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.602][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.603][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:28.604][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:28.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.605][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.606][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.607][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.609][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.610][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.611][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.613][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.613][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.614][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.616][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.617][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.618][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.620][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.621][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.622][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.623][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.624][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:28.625][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:28.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.627][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.628][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:28.629][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:28.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.630][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.631][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.632][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.634][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.635][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:28.636][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:28.637][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:28.638][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:28.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.639][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.640][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:28.641][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:28.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.643][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.644][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.645][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.647][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.647][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:28.648][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:28.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.650][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.651][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:28.652][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:28.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.654][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.655][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.656][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.657][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.658][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.659][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.661][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.662][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.663][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.664][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.665][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.666][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.668][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.669][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.670][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.672][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:28.673][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:28.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.675][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.676][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:28.677][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:28.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.679][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.680][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:28.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:28.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:28.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:28.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:28.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:28.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:28.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.692][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:28.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:28.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.695][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:28.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:28.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.699][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:28.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:28.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.714][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:28.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:28.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.717][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:28.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:28.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:28.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:28.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:28.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:28.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:28.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:28.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:28.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:28.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.747][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.751][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.754][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.780][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.784][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.788][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.792][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:28.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:28.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:28.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:28.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:28.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:28.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.803][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:28.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:28.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:28.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:28.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:28.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:28.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.825][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-08-02 16:02:28.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:28.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:28.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:28.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:28.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:28.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:28.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:28.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:28.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:28.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:28.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:28.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.843][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:28.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:28.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.846][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:28.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:28.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:28.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:28.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:28.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:28.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:28.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:28.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:28.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:28.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.879][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.883][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.901][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.904][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.908][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:28.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:28.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.911][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:28.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:28.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.915][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:28.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:28.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:28.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:28.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.922][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.926][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.930][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:28.931][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:28.931][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:28.932][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:28.933][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:28.934][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:28.935][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:28.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.938][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:28.939][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:28.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.940][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.945][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:28.946][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:28.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.948][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.948][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:28.949][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:28.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.951][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.952][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.953][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:28.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.955][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.956][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.957][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:28.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.958][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.959][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.960][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:28.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.962][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.963][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.964][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:28.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.966][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.967][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.968][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:28.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.969][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.970][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:28.971][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:28.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.973][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.974][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:28.975][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:28.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.977][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.977][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.978][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:28.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.980][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.981][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:28.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:28.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.985][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:28.986][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:28.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.987][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:28.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.991][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.992][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:28.993][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:28.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.995][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.996][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:28.997][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:28.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:28.998][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:28.999][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.000][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.002][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.003][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.004][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.006][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.007][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.008][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.009][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.010][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.011][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.013][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.014][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.015][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.017][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.018][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:29.018][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:29.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.020][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.021][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:29.022][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:29.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.024][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.025][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:29.026][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:29.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.027][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.028][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:29.029][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:29.030][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:29.031][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:29.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.033][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.034][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:29.035][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:29.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.037][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.038][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.040][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.041][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:29.042][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:29.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.044][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.045][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:29.046][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:29.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.048][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.048][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.049][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.052][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.053][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.059][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.060][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.061][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.062][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.063][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.064][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.066][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.067][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.068][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.070][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.070][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:29.071][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:29.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.073][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.074][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:29.075][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:29.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.077][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.078][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:29.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:29.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:29.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:29.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:29.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:29.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:29.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.090][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:29.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:29.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.093][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:29.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:29.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.097][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:29.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:29.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:29.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:29.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.115][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:29.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:29.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:29.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:29.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:29.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:29.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:29.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:29.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:29.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:29.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.145][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.148][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.152][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.178][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.181][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.185][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:29.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:29.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:29.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:29.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:29.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:29.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.200][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:29.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:29.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:29.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:29.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:29.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:29.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.217][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-08-02 16:02:29.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:29.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:29.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:29.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:29.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:29.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:29.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:29.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:29.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:29.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:29.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:29.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.234][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:29.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:29.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.238][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:29.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:29.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:29.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:29.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:29.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:29.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:29.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:29.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:29.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:29.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.271][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.275][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.293][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.297][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:29.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:29.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.308][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:29.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:29.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.311][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:29.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:29.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:29.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:29.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.319][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:29.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:29.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.322][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:29.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:29.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.326][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:29.327][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:29.328][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:29.328][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:29.329][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:29.330][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:29.331][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:29.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.334][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:29.335][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:29.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.336][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.340][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.341][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:29.342][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:29.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.344][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.344][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:29.345][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:29.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.347][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.348][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.349][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.352][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.352][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.354][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.355][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.356][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.358][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.359][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.361][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.362][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.363][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.365][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.366][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:29.367][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:29.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.369][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.369][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:29.370][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:29.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.372][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.373][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:29.374][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:29.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.376][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.377][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:29.378][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:29.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.380][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:29.381][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:29.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.383][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.386][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.387][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:29.388][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:29.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.390][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.391][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:29.392][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:29.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.394][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.394][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.395][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.397][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.398][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.399][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.401][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.402][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.403][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.404][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.405][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.406][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.408][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.409][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.410][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.411][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.412][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:29.413][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:29.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.415][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.416][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:29.417][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:29.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.419][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.419][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:29.420][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:29.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.422][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.423][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:29.424][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:29.425][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:29.426][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:29.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.428][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.428][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:29.429][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:29.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.431][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.432][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.433][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.435][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.436][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:29.437][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:29.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.438][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.439][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:29.440][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:29.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.442][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.443][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.444][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.446][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.446][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.447][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.449][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.450][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.451][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.453][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.454][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.455][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.456][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.457][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:29.458][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:29.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.460][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.461][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:29.462][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:29.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.464][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.465][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:29.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:29.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:29.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:29.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:29.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:29.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:29.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.477][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:29.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:29.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.480][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:29.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:29.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.484][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:29.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:29.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.499][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:29.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:29.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:29.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:29.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.506][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:29.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:29.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:29.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:29.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:29.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:29.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:29.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:29.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.559][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.562][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.566][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:29.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:29.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:29.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:29.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:29.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:29.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:29.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:29.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.584][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:29.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:29.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:29.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:29.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.596][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-08-02 16:02:29.597][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:29.598][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:29.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:29.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:29.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:29.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:29.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:29.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:29.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:29.612][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:29.614][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:29.616][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-08-02 16:02:29.617][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:29.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:29.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:29.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:29.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:29.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:29.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:29.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:29.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:29.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:29.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:29.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:29.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:29.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:29.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:29.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:29.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:29.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:29.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:29.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:29.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:29.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:29.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:29.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:29.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:29.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:29.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:29.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:29.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:29.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:29.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:29.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:29.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:29.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:29.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:29.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:29.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:29.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:29.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:29.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:29.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:29.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:29.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:29.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:29.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:29.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:29.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:29.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:29.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:29.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:29.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:29.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:29.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:29.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:29.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:29.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:29.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:29.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:29.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:29.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:29.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:29.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:29.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:29.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:29.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-02 16:02:29.782][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:29.784][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:29.786][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-08-02 16:02:29.787][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:29.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:29.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:29.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:29.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:29.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:29.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:29.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:29.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:29.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:29.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:29.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:29.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:29.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:29.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:29.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:29.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:29.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:29.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:29.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:29.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:29.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:29.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:29.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:29.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:29.854][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:29.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:29.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:29.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:29.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:29.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:29.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:29.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:29.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:29.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:29.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:29.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:29.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.872][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:29.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:29.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.876][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:29.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:29.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.886][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:29.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:29.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.890][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:29.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:29.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:29.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:29.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:29.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:29.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.908][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.912][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.930][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.933][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:29.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:29.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:29.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:29.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:29.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:29.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:29.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:29.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.952][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:29.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:29.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.955][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:29.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:29.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.959][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:29.960][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:29.961][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:29.962][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:29.963][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:29.963][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:29.964][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:29.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.966][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.967][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:29.968][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:29.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.970][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.971][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:29.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.973][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.974][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:29.975][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:29.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.977][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.978][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:29.979][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:29.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.981][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.981][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.982][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:29.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.985][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.986][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:29.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.988][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.989][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.990][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:29.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.991][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.992][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.993][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:29.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.995][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.996][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.997][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:29.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:29.999][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:29.999][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.000][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.002][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.003][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.004][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.006][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.007][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:30.008][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:30.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.009][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.010][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.011][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.013][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.014][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.015][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.017][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.019][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.020][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.021][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.022][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.024][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.025][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.026][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.027][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.028][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.029][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.031][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.032][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.033][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.035][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.036][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.037][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.038][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.039][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.040][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.046][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.047][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.048][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.050][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.050][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.051][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.053][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.054][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.055][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.057][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.058][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:30.058][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:30.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.060][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.061][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:30.062][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:30.063][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.064][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.066][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.066][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.067][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.069][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.070][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.071][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.073][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.074][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.075][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.076][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.077][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.078][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.080][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.081][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.082][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.083][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.084][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.085][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.088][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.089][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.090][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.091][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.092][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.094][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.095][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.096][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.098][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.101][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.102][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.103][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.106][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:30.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.118][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.121][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.125][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.143][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.147][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.172][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.176][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.180][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.205][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.209][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.213][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.217][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.228][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.244][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-08-02 16:02:30.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:30.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:30.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:30.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:30.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:30.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:30.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:30.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.262][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.266][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.277][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.280][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.302][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.306][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.324][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.328][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.331][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.346][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:30.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:30.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.349][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:30.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:30.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.353][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:30.354][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:30.355][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:30.356][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:30.357][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:30.357][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.358][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.360][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.361][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.362][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.364][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.367][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.368][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.369][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.371][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.372][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.373][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.374][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.375][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.376][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.378][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.379][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.380][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.382][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.382][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.383][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.385][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.386][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.387][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.389][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.390][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.391][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.393][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.394][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.396][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.397][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.398][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.399][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.400][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:30.401][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:30.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.403][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.404][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.405][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.407][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.407][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.408][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.410][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.411][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.414][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.415][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.416][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.417][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.418][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.419][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.421][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.422][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.423][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.425][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.425][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.426][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.428][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.429][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.430][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.432][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.433][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.434][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.435][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.436][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.437][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.439][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.440][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.441][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.443][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.444][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.444][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.446][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.447][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:30.448][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:30.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.451][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:30.452][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:30.453][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.455][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.456][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.457][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.463][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.463][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.464][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.467][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.468][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.470][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.471][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.472][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.474][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.475][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.478][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.479][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.481][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.481][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.482][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.485][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.486][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.488][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.489][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.490][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.491][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.492][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:30.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.504][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.508][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.512][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.534][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.585][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.589][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.592][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.596][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.600][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.603][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.611][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.623][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-08-02 16:02:30.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:30.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:30.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:30.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:30.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:30.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:30.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:30.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.641][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.644][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.659][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.677][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.681][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.699][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.703][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.717][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.721][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:30.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:30.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.724][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:30.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:30.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.728][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:30.729][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:30.730][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:30.731][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:30.732][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:30.733][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.734][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.735][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.736][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.737][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.739][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.740][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.741][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.743][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.743][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.744][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.746][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.747][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.748][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.750][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.751][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.752][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.753][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.754][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.755][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.757][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.758][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.759][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.761][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.762][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.763][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.764][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.765][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.766][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.768][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.769][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.770][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.772][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.773][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.777][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.780][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:30.781][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:30.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.783][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.784][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.785][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.786][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.787][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.788][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.790][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.791][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.792][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.794][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.794][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.795][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.797][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.798][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.799][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.801][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.801][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.802][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.804][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.805][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.806][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:30.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.808][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.809][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.810][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.811][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.812][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.813][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.815][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.816][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.817][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.818][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.819][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.820][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.822][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.823][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.824][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.826][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.826][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:30.827][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:30.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.829][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.830][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:30.831][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:30.832][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.833][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.835][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.835][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.836][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.838][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.839][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.842][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.843][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.844][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.845][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.846][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.847][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.849][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.850][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.851][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.852][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.853][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.854][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.856][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.857][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.858][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.860][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.860][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.861][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.863][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.864][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.865][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.867][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.868][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.869][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.870][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.871][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:30.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:30.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:30.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.883][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.887][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.891][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:30.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:30.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:30.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.909][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.913][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:30.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:30.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:30.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:30.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:30.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:30.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:30.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.961][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.965][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.968][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:30.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:30.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:30.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.983][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:30.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:30.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:30.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:30.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.000][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-08-02 16:02:31.000][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:31.001][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-02 16:02:31.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:31.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:31.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:31.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:31.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:31.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:31.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:31.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:31.069][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:31.072][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:31.073][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-02 16:02:31.074][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-02 16:02:31.077][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:31.079][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:31.081][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-02 16:02:31.082][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:31.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:31.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:31.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:31.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:31.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:31.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:31.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:31.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:31.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:31.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:31.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:31.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:31.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:31.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:31.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:31.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:31.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:31.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:31.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:31.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:31.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:31.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:31.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:31.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:31.144][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:31.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:31.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:31.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:31.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:31.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:31.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:31.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:31.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:31.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:31.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:31.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:31.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.162][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:31.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:31.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.166][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:31.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:31.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.177][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:31.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:31.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.180][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:31.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:31.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:31.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:31.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:31.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:31.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.199][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.202][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.221][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.224][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:31.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:31.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:31.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:31.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:31.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:31.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:31.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:31.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.242][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:31.243][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:31.244][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:31.245][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:31.246][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:31.247][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:31.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:31.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.250][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.251][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:31.252][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:31.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.253][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.254][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.255][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.257][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.258][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:31.259][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:31.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.261][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.261][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:31.262][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:31.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.264][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.265][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.266][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.272][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.273][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.274][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.276][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.277][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.278][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.279][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.280][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.281][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.283][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.284][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.285][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.286][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.287][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:31.288][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:31.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.290][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.291][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:31.292][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:31.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.294][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.294][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:31.295][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:31.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.297][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.298][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:31.299][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:31.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.301][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.302][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.303][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.304][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.305][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:31.306][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:31.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.309][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:31.310][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:31.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.312][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.313][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.316][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.317][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.319][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.319][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.320][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.322][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.323][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.324][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.326][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.327][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.328][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.329][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.330][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:31.331][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:31.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.334][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:31.335][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:31.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.336][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.337][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:31.338][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:31.339][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:31.340][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:31.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.342][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.343][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:31.344][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:31.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.345][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.346][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.347][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.349][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.350][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:31.351][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:31.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.352][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.353][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:31.354][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:31.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.356][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.357][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.358][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.360][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.360][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.361][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.363][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.364][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.365][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.367][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.368][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.368][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.370][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.371][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.372][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.374][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.375][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:31.376][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:31.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.377][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.378][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:31.379][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:31.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.381][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.382][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:31.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:31.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:31.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:31.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:31.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:31.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:31.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.394][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:31.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:31.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.397][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:31.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:31.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.401][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:31.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:31.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.416][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:31.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:31.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:31.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:31.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.423][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:31.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:31.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:31.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:31.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:31.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:31.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:31.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:31.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.449][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.453][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.457][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.482][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.486][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.490][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:31.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:31.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.497][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:31.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:31.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.501][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:31.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:31.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:31.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:31.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:31.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:31.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:31.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:31.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.525][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-08-02 16:02:31.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:31.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:31.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:31.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:31.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:31.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:31.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:31.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:31.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:31.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:31.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:31.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.543][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:31.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:31.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.546][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:31.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:31.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.557][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:31.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:31.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:31.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:31.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:31.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:31.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:31.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:31.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.579][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.583][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.601][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.604][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.608][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:31.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:31.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:31.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:31.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.615][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:31.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:31.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:31.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:31.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.622][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:31.623][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:31.624][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:31.625][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:31.626][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:31.627][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:31.628][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:31.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.630][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.630][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:31.631][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:31.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.633][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.634][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.635][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.637][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.638][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:31.639][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:31.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.640][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.641][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:31.642][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:31.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.644][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.645][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.646][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.648][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.648][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.649][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.651][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.652][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.653][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.655][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.656][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.657][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.658][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.659][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.660][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.662][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.663][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:31.664][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:31.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.666][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.667][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:31.668][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:31.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.669][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.670][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:31.671][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:31.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.673][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.674][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:31.675][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:31.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.677][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.677][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.678][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.680][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.681][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:31.682][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:31.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.684][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.685][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:31.686][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:31.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.687][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.688][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.689][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.691][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.692][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.693][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.695][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.696][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.697][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.698][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.699][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.700][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.702][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.703][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.704][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.706][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.706][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:31.707][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:31.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.709][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.710][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:31.711][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:31.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.713][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.714][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:31.715][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:31.716][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:31.717][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:31.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.718][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.719][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:31.720][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:31.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.722][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.723][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.724][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.725][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.726][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:31.727][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:31.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.729][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.730][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:31.731][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:31.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.733][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.734][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.735][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.736][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.737][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.738][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.740][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.741][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.742][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.744][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.745][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.746][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.747][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.748][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.749][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.751][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.752][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:31.753][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:31.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.759][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.760][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:31.761][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:31.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.762][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.763][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:31.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:31.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:31.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:31.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:31.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:31.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:31.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.775][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:31.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:31.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.779][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:31.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:31.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.783][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:31.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:31.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.797][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:31.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:31.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.801][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:31.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:31.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.804][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:31.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:31.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:31.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:31.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:31.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:31.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:31.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:31.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.830][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.834][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.837][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.863][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.867][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.870][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:31.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:31.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:31.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:31.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:31.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:31.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.885][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:31.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:31.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:31.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:31.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:31.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:31.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.902][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-08-02 16:02:31.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:31.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:31.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:31.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:31.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:31.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:31.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:31.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:31.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:31.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:31.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:31.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.919][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:31.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:31.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.923][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:31.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:31.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:31.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:31.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:31.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:31.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:31.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:31.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:31.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:31.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:31.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:31.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.956][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.960][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:31.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:31.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:31.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.978][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.982][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:31.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:31.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:31.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:31.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:31.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:31.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:31.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:31.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:31.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:31.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:32.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.005][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:32.005][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:32.006][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:32.007][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:32.008][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:32.009][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.010][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.012][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.013][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.014][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.015][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.016][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.017][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.019][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.020][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:32.021][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:32.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.022][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.023][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:32.024][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:32.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.026][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.027][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.028][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.029][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.030][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.031][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.033][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.034][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.035][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.037][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.037][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.038][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.040][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.041][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.042][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.044][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.045][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:32.046][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:32.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.047][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.048][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:32.049][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:32.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.052][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.053][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.054][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.055][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.056][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.058][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.059][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.062][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.062][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:32.063][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:32.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.065][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.066][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:32.067][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:32.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.069][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.070][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.071][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.072][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.073][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.074][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.076][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.077][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.078][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.080][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.080][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.081][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.083][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.084][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.085][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.088][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:32.088][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:32.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.090][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.091][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:32.092][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:32.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.094][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.095][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:32.096][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:32.097][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.097][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.099][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.100][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.101][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.103][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.106][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.107][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:32.108][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:32.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.110][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.111][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:32.112][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:32.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.113][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.114][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.115][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.117][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.118][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.119][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.121][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.122][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.123][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.124][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.125][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.126][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.128][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.129][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:32.130][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:32.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.131][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.132][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:32.133][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:32.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.135][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.136][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:32.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.148][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.152][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.155][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.170][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:32.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:32.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.174][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:32.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:32.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.178][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:32.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:32.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:32.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:32.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:32.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:32.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:32.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:32.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.226][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.229][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.233][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.237][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:32.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:32.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:32.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:32.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:32.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:32.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:32.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:32.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:32.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:32.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:32.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:32.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.269][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-08-02 16:02:32.270][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:32.271][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:32.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:32.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:32.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:32.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:32.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:32.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:32.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:32.284][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:32.286][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:32.289][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-08-02 16:02:32.290][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:32.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:32.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:32.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:32.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:32.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:32.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:32.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:32.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:32.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:32.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:32.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:32.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:32.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:32.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:32.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:32.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:32.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:32.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:32.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:32.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:32.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:32.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:32.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:32.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:32.352][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:32.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:32.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:32.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:32.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:32.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:32.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:32.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:32.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.370][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.374][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:32.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:32.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.389][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:32.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:32.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:32.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:32.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:32.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:32.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.407][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.411][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.429][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.433][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:32.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:32.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.440][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:32.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:32.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:32.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:32.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:32.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:32.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.451][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:32.452][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:32.453][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:32.454][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:32.455][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:32.456][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.457][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.458][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.459][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.460][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.462][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.465][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.466][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:32.467][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:32.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.469][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.470][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:32.471][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:32.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.474][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.475][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.476][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.477][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.478][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.480][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.481][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.482][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.485][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.486][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.492][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.493][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.495][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.496][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:32.497][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:32.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.499][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.500][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:32.501][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:32.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.503][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.504][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.506][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.507][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.508][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.510][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.510][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.511][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.513][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.514][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:32.515][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:32.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.517][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.518][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:32.518][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:32.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.520][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.521][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.522][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.524][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.525][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.526][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.527][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.528][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.529][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.531][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.532][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.533][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.534][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.535][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.536][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.538][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.539][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:32.540][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:32.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.542][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.542][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:32.543][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:32.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.545][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.546][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:32.547][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:32.548][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.551][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.551][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.552][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.554][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.555][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.556][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.558][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.559][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:32.560][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:32.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.561][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.562][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:32.563][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:32.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.566][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.567][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.568][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.569][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.570][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.572][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.573][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.574][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.576][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.576][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.577][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.579][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.580][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.581][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.583][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.584][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:32.584][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:32.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.586][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.587][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:32.588][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:32.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.590][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.591][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:32.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.603][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.606][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.610][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:32.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:32.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:32.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:32.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:32.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:32.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:32.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:32.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:32.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:32.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:32.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:32.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.658][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.662][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.665][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.691][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.695][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.699][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:32.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:32.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:32.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:32.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:32.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:32.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:32.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:32.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.717][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:32.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:32.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:32.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:32.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.734][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-08-02 16:02:32.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:32.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:32.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:32.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:32.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:32.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:32.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:32.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.752][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.755][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:32.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:32.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.770][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:32.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:32.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:32.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:32.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:32.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:32.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.788][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.791][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.809][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.813][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.816][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:32.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:32.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:32.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:32.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:32.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:32.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:32.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:32.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.831][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:32.832][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:32.833][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:32.833][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:32.834][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:32.835][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.836][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.838][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.839][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.840][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.841][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.842][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.843][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.845][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.846][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:32.847][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:32.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.849][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.849][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:32.850][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:32.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.852][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.853][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.854][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.856][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.857][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.858][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.859][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.860][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.861][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.863][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.864][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.865][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.866][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.867][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.868][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.870][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.871][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:32.872][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:32.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.874][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.875][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:32.876][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:32.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.877][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.878][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.879][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.881][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.882][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.883][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.885][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.885][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.886][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.888][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.889][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:32.890][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:32.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.892][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.893][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:32.894][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:32.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.895][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.896][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.897][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.899][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.900][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.901][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:32.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.903][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.903][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.904][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.906][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.907][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.908][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.910][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.911][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.912][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.913][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.914][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:32.915][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:32.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.917][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.918][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:32.919][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:32.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.921][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.921][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:32.922][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:32.923][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.924][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.926][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.927][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.928][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.930][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.931][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.933][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.934][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:32.935][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:32.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.938][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:32.939][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:32.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.940][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.941][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:32.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.945][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.946][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:32.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.948][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.948][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.949][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:32.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.951][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.952][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.953][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:32.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.955][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.956][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:32.957][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:32.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.958][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.959][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:32.960][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:32.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.962][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.963][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:32.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:32.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:32.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.979][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.983][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.986][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:32.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:32.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:32.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:32.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:32.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.001][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.008][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.019][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.055][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.059][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.062][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.066][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:33.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:33.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.070][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:33.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:33.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:33.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:33.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.077][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:33.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:33.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:33.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:33.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.084][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:33.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:33.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.093][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-08-02 16:02:33.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:33.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:33.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:33.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:33.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:33.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:33.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:33.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:33.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:33.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:33.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:33.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.110][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:33.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:33.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.114][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:33.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:33.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.125][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.129][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.147][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.150][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.169][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.172][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:33.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:33.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.180][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:33.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:33.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:33.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:33.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.187][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:33.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:33.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.191][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:33.192][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:33.192][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:33.193][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:33.194][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:33.195][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:33.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:33.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.198][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.199][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:33.200][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:33.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.201][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.202][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.205][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.206][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.207][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.209][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.210][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.211][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.212][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.213][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.218][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.220][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.221][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.222][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.223][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.224][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.225][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.227][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.228][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.229][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.231][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.231][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.232][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.234][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.235][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:33.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:33.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.239][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:33.239][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:33.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.241][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.242][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:33.243][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:33.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.245][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.246][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:33.247][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:33.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.248][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.249][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.250][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.252][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.253][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.255][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.256][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.257][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.259][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.260][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.261][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.262][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.263][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.264][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.266][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.267][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.268][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.270][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.270][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.271][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.273][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.274][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.275][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.277][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.278][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:33.279][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:33.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.280][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.281][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:33.282][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:33.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.284][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.285][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:33.286][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:33.287][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:33.288][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:33.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.289][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.290][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:33.291][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:33.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.293][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.294][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.295][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.296][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.297][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.298][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.300][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.301][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.302][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.303][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.304][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.305][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.307][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.308][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.309][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.311][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.312][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.314][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.315][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.316][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.318][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.318][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:33.319][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:33.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.321][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.322][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:33.323][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:33.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.325][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.326][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:33.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:33.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:33.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:33.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:33.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:33.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:33.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.338][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:33.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:33.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.341][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:33.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:33.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.345][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:33.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:33.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.363][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.415][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.422][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:33.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:33.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:33.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:33.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:33.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:33.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:33.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:33.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:33.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:33.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:33.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:33.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.453][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-08-02 16:02:33.454][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:33.459][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:33.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:33.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:33.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:33.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:33.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:33.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:33.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:33.472][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:33.475][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:33.478][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-02 16:02:33.479][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:33.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:33.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:33.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:33.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:33.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:33.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:33.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:33.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:33.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:33.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:33.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:33.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:33.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:33.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:33.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:33.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:33.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:33.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:33.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:33.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:33.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:33.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:33.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:33.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:33.542][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:33.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:33.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:33.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:33.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:33.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:33.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:33.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:33.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:33.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:33.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:33.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:33.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.559][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:33.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:33.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.563][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:33.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:33.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.577][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.595][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.599][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.617][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.621][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.625][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:33.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:33.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:33.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:33.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.632][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:33.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:33.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.635][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:33.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:33.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.639][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:33.640][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:33.641][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:33.642][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:33.643][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:33.644][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:33.644][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:33.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.646][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.647][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:33.648][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:33.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.650][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.651][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.652][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.653][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.654][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.655][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.657][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.658][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.659][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.661][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.662][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.662][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.664][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.665][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.666][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.668][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.669][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.670][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.671][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.672][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.673][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.675][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.676][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.677][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.679][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.679][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:33.680][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:33.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.682][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.683][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:33.684][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:33.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.686][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.687][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:33.688][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:33.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.689][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.690][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:33.691][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:33.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.693][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.694][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.695][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.697][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.698][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.699][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.705][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.706][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.707][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.709][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.709][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.710][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.712][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.713][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.714][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.716][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.717][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.718][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.720][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.721][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.722][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.724][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.725][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.726][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.727][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.728][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:33.729][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:33.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.731][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.732][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:33.733][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:33.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.735][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.736][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:33.737][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:33.738][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:33.739][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:33.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.741][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.742][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:33.743][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:33.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.744][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.745][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.746][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.748][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.749][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.750][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.752][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.753][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.754][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.756][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.757][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.758][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.759][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.760][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.761][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.763][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.764][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.765][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.767][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.768][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.769][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.771][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.772][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.773][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.776][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:33.777][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:33.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.778][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.779][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:33.780][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:33.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.782][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.783][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:33.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:33.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:33.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:33.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:33.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:33.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:33.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.796][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:33.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:33.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.800][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:33.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:33.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.803][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:33.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:33.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.819][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.852][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.856][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.859][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:33.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:33.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.885][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.889][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.893][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:33.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:33.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:33.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:33.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:33.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:33.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:33.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:33.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:33.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:33.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:33.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.915][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:33.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:33.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.924][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-08-02 16:02:33.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:33.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:33.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:33.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:33.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:33.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:33.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:33.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:33.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:33.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:33.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:33.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.942][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:33.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:33.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.945][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:33.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:33.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:33.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.973][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:33.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:33.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:33.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:33.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:33.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.994][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:33.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:33.998][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:33.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.016][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.019][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:34.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:34.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:34.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:34.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:34.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:34.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:34.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:34.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.037][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:34.038][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:34.039][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:34.040][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:34.041][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:34.042][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:34.043][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:34.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.044][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.045][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:34.046][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:34.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.048][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.049][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.050][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.051][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.052][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:34.053][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:34.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.055][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.056][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:34.057][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:34.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.059][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.059][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.060][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.062][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.063][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.064][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.066][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.066][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.067][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.069][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.070][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.071][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.073][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.074][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.075][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.076][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.077][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:34.078][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:34.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.080][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.081][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:34.082][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:34.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.083][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.084][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:34.085][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:34.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.088][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:34.089][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:34.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.091][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.092][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.094][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.095][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:34.096][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:34.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.099][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:34.100][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:34.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.101][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.102][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.103][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.106][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.107][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.110][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.111][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.112][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.113][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.114][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.117][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.118][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.120][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.121][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:34.122][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:34.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.123][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.124][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:34.125][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:34.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.127][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.128][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:34.129][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:34.130][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:34.131][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:34.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.133][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.134][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:34.134][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:34.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.136][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.137][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.140][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.141][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:34.142][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:34.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.144][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.144][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:34.145][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:34.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.147][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.148][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.149][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.151][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.152][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.153][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.154][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.155][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.156][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.159][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.160][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.162][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.163][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:34.164][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:34.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.165][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.166][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:34.167][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:34.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.169][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.170][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:34.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:34.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:34.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:34.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:34.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:34.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:34.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.182][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:34.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:34.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.186][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:34.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:34.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.190][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:34.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:34.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:34.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:34.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.212][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:34.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:34.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.216][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:34.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:34.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:34.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:34.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:34.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:34.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:34.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:34.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.263][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.267][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.270][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.274][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:34.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:34.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:34.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:34.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:34.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:34.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.285][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:34.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:34.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.288][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:34.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:34.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.292][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:34.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:34.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.301][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-08-02 16:02:34.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:34.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:34.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:34.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:34.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:34.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:34.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:34.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:34.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:34.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:34.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:34.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.318][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:34.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:34.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.321][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:34.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:34.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.332][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:34.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:34.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:34.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:34.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:34.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:34.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:34.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:34.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.354][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.358][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.376][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.380][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.383][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:34.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:34.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.387][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:34.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:34.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:34.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:34.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.394][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:34.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:34.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.398][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:34.399][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:34.400][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:34.401][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:34.401][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:34.402][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:34.403][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:34.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.405][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.406][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:34.407][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:34.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.409][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.410][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.412][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.413][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:34.414][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:34.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.416][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.417][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:34.418][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:34.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.419][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.420][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.421][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.423][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.424][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.425][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.427][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.427][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.428][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.430][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.431][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.432][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.434][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.435][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.436][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.437][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.438][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:34.439][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:34.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.441][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.442][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:34.443][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:34.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.445][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.446][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:34.450][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:34.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.452][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.453][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:34.454][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:34.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.456][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.460][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:34.461][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:34.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.463][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.464][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:34.465][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:34.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.467][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.468][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.470][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.471][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.472][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.474][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.475][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.478][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.479][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.481][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.481][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.482][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.485][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:34.486][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:34.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.488][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.489][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:34.489][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:34.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.491][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.492][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:34.493][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:34.494][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:34.495][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:34.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.497][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.497][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:34.498][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:34.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.500][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.501][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.504][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.505][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:34.505][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:34.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.507][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.508][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:34.509][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:34.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.511][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.512][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.513][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.514][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.515][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.516][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.518][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.519][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.520][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.521][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.522][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.523][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.525][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.526][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:34.527][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:34.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.528][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.529][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:34.530][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:34.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.532][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.533][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:34.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:34.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:34.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:34.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:34.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:34.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:34.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.545][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:34.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:34.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.548][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:34.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:34.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.552][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:34.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:34.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.567][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:34.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:34.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.570][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:34.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:34.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:34.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:34.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:34.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:34.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:34.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:34.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:34.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:34.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.622][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.625][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.629][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.633][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:34.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:34.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:34.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:34.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:34.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:34.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:34.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:34.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:34.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:34.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:34.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:34.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.660][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-08-02 16:02:34.661][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:34.662][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:34.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:34.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:34.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:34.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:34.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:34.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:34.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:34.679][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:34.682][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:34.683][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-02 16:02:34.684][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-02 16:02:34.687][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:34.693][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:34.696][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-02 16:02:34.697][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:34.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:34.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:34.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:34.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:34.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:34.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:34.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:34.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:34.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:34.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:34.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:34.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:34.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:34.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:34.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:34.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:34.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:34.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:34.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:34.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:34.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:34.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:34.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:34.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:34.761][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:34.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:34.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:34.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:34.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:34.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:34.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:34.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:34.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:34.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:34.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:34.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:34.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.779][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:34.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:34.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.782][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:34.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:34.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.793][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:34.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:34.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.797][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:34.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:34.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:34.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:34.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:34.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:34.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.815][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.818][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.836][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.840][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:34.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:34.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:34.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:34.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:34.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:34.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:34.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:34.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.858][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:34.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:34.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.862][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:34.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:34.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.866][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:34.866][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:34.867][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:34.868][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:34.869][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:34.870][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:34.871][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:34.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.873][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.874][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:34.875][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:34.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.876][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.877][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.881][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:34.882][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:34.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.884][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.884][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:34.885][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:34.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.887][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.888][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.889][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.891][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.892][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.893][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.894][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.895][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.896][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.898][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.899][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.900][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.901][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.902][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.903][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.905][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.906][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:34.907][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:34.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.909][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.910][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:34.911][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:34.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.912][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.913][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:34.914][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:34.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.916][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.917][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:34.918][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:34.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.919][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.920][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:34.921][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:34.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.923][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.927][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.928][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:34.929][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:34.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.931][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:34.932][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:34.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.939][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.940][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.942][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.943][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.944][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.945][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.946][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.947][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.949][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.950][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.951][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.952][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.953][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.954][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:34.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.956][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.957][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:34.958][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:34.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.959][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.960][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:34.961][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:34.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.963][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.964][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:34.965][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:34.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.967][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.967][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:34.968][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:34.969][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:34.970][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:34.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.972][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.973][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:34.974][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:34.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.975][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:34.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.979][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.980][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:34.981][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:34.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.982][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.983][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:34.984][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:34.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.986][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.987][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.988][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:34.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.990][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.991][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:34.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.993][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.994][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.995][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:34.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:34.997][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:34.998][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.998][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:34.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.000][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.001][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.002][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.004][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.005][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:35.006][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:35.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.007][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.008][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:35.009][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:35.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.011][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.012][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:35.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:35.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:35.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:35.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:35.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:35.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:35.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.024][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:35.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:35.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.027][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:35.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:35.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.031][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:35.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:35.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.045][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:35.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:35.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.049][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:35.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:35.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.053][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:35.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:35.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:35.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:35.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:35.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:35.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:35.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:35.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.078][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.082][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.086][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.111][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.115][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.119][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:35.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:35.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.126][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:35.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:35.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.130][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:35.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:35.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:35.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:35.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:35.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:35.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.141][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:35.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:35.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.150][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-08-02 16:02:35.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:35.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:35.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:35.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:35.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:35.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:35.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:35.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:35.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:35.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:35.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:35.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.168][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:35.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:35.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.171][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:35.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:35.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.186][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:35.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:35.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.190][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:35.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:35.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:35.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:35.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:35.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:35.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.208][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.211][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.229][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.233][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:35.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:35.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:35.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:35.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:35.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:35.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:35.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:35.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.251][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:35.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:35.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.254][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:35.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:35.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.258][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:35.259][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:35.260][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:35.261][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:35.261][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:35.262][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:35.263][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:35.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.265][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.266][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:35.267][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:35.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.269][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.269][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.272][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.273][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:35.274][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:35.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.276][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.276][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:35.277][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:35.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.279][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.280][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.281][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.283][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.284][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.285][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.286][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.287][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.288][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.290][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.291][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.292][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.293][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.294][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.295][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.297][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.298][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:35.299][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:35.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.301][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.301][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:35.302][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:35.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.304][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.305][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:35.306][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:35.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.308][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.309][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:35.310][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:35.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.312][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:35.313][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:35.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.319][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.319][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:35.320][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:35.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.322][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.323][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:35.324][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:35.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.326][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.327][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.328][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.329][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.330][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.331][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.333][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.334][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.335][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.337][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.337][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.338][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.340][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.341][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.342][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.344][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.345][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:35.346][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:35.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.347][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.348][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:35.349][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:35.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.352][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:35.353][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:35.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.355][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.355][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:35.356][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:35.357][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:35.358][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:35.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.360][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.361][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:35.362][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:35.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.364][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.364][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.367][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.368][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:35.369][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:35.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.371][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.372][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:35.373][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:35.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.374][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.375][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.376][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.378][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.379][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.380][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.382][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.382][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.383][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.385][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.386][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.387][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.389][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.390][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.391][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.392][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.393][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:35.394][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:35.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.396][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.397][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:35.398][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:35.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.399][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.400][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:35.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:35.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:35.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:35.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:35.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:35.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:35.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.412][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:35.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:35.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.416][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:35.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:35.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.424][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:35.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:35.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.438][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:35.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:35.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.442][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:35.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:35.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.446][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:35.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:35.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:35.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:35.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:35.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:35.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:35.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:35.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.471][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.475][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.478][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.504][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.507][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.511][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.515][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:35.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:35.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.518][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:35.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:35.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:35.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:35.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:35.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:35.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.529][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:35.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:35.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:35.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:35.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.542][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-08-02 16:02:35.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:35.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:35.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:35.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:35.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:35.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:35.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:35.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:35.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:35.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:35.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:35.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.559][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:35.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:35.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.563][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:35.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:35.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:35.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:35.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.578][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:35.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:35.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:35.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:35.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:35.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:35.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.596][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.599][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.618][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.621][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.625][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:35.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:35.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:35.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:35.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.632][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:35.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:35.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:35.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:35.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.640][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:35.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:35.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.643][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:35.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:35.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.647][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:35.648][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:35.649][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:35.649][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:35.650][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:35.651][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:35.652][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:35.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.654][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.655][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:35.656][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:35.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.658][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.659][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.663][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.666][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:35.667][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:35.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.669][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.670][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:35.671][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:35.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.673][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.674][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.676][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.677][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.678][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.679][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.680][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.681][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.683][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.684][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.685][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.687][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.687][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.688][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.691][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:35.692][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:35.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.694][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.694][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:35.695][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:35.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.697][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.698][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:35.699][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:35.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.701][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.702][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:35.702][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:35.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.704][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.705][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:35.706][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:35.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.708][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.709][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.710][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.712][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:35.713][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:35.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.715][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.716][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:35.717][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:35.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.718][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.719][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.720][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.722][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.723][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.724][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:35.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.726][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.726][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.727][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.729][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.730][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.731][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.733][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.734][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.734][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.736][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.737][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:35.738][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:35.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.740][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.741][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:35.742][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:35.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.743][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.744][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:35.745][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:35.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.747][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.748][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:35.749][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:35.750][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:35.750][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:35.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.752][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.753][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:35.754][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:35.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.756][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.757][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.758][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.759][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.760][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:35.761][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:35.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.763][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.764][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:35.765][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:35.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.766][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.767][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.768][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.770][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.771][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.772][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.773][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.774][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.778][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.779][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.781][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.781][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:35.782][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:35.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.784][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.785][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:35.786][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:35.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.788][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.789][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:35.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:35.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:35.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:35.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:35.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:35.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:35.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.801][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:35.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:35.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.804][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:35.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:35.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.808][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:35.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:35.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:35.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:35.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:35.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:35.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:35.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.830][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:35.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:35.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:35.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:35.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:35.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:35.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:35.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:35.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:35.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:35.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.881][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.885][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.888][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:35.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.892][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:35.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:35.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:35.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:35.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:35.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:35.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:35.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:35.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:35.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:35.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.915][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:35.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:35.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.923][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-08-02 16:02:35.924][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:35.925][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:35.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:35.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:35.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:35.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:35.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:35.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:35.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:35.938][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:35.940][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:35.943][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-08-02 16:02:35.944][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:35.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:35.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:35.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:35.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:35.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:35.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:35.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:35.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:35.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:35.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:35.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:35.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:35.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:35.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:35.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:35.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:35.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:35.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:35.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:35.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:35.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:35.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:35.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:35.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:35.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:35.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:35.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:36.005][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:36.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:36.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:36.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:36.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:36.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:36.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:36.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:36.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.023][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.026][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.037][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.041][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:36.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:36.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:36.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:36.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.059][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.063][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.081][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.085][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.088][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:36.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:36.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:36.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:36.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:36.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:36.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.099][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:36.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:36.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.103][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.107][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.110][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:36.111][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:36.112][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:36.113][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:36.114][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:36.115][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.116][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.117][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.118][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.119][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.121][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.125][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.125][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.126][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.128][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.129][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:36.130][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:36.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.133][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.134][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.135][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.136][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.137][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.140][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.141][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.143][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.144][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.145][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.151][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.152][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.153][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.154][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.155][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:36.156][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:36.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.159][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:36.160][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:36.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.162][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.162][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.163][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.165][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.166][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.167][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.169][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.170][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.171][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.176][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.177][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.178][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.179][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.180][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:36.181][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:36.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.183][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.184][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.185][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.186][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.187][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.188][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.190][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.191][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.192][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.194][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.194][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.195][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.197][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.198][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.199][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.201][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.202][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:36.203][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:36.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.204][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.205][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:36.206][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:36.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.208][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.209][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.210][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.212][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.212][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:36.213][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:36.214][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.217][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.218][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.219][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.221][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.222][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.224][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.225][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.226][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.228][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.229][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:36.230][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:36.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.231][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.232][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.233][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.235][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.236][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.237][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.239][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.240][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.242][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.243][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.244][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.246][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.246][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.247][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.249][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.250][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:36.251][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:36.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.253][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.254][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:36.255][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:36.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.256][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.257][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:36.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.269][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.273][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.277][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.292][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.299][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:36.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:36.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:36.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:36.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:36.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:36.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.325][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.329][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.333][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.359][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.362][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.366][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:36.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:36.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:36.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:36.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:36.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:36.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.381][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:36.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:36.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:36.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:36.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.388][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:36.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:36.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.402][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-08-02 16:02:36.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:36.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:36.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:36.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:36.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:36.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:36.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:36.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.419][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.423][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.434][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:36.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:36.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:36.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:36.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.456][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.459][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.477][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.481][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:36.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:36.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:36.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:36.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:36.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:36.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.495][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:36.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:36.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.499][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.502][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.506][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:36.507][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:36.508][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:36.509][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:36.510][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:36.511][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.511][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.513][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.514][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.515][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.517][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.519][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.520][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.521][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.522][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.524][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.525][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:36.526][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:36.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.528][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.528][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.529][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.531][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.532][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.533][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.535][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.536][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.537][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.539][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.539][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.540][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.542][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.543][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.544][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.546][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.547][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:36.548][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:36.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.549][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.550][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:36.551][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:36.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.553][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.554][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.555][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.557][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.558][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.558][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.560][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.561][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.562][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.564][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.565][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.566][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.567][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.568][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.569][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.571][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.572][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:36.573][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:36.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.575][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.576][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.577][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.578][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.579][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.580][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.582][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.583][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.584][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.586][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.586][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.587][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.589][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.590][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.591][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.593][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.594][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:36.595][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:36.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.596][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.597][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:36.598][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:36.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.600][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.601][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.602][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.604][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.605][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:36.606][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:36.606][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.607][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.609][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.610][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.611][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.613][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.614][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.615][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.616][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.617][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.618][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.620][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.621][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:36.622][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:36.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.624][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.624][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.625][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.627][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.628][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.629][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.635][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.636][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.637][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.639][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.639][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.640][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.642][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.643][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:36.644][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:36.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.646][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.647][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:36.648][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:36.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.649][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.650][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:36.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.662][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.666][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.669][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.684][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.688][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.691][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:36.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:36.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:36.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:36.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:36.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:36.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.739][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.742][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.746][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:36.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:36.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:36.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:36.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:36.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:36.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.761][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:36.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:36.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:36.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:36.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:36.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:36.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.777][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-08-02 16:02:36.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:36.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:36.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:36.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:36.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:36.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:36.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:36.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.795][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.799][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.813][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:36.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:36.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:36.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:36.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.832][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.835][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.854][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.857][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:36.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:36.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:36.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:36.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:36.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:36.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:36.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:36.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.880][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.884][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.887][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:36.888][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:36.889][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:36.890][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:36.891][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:36.892][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.893][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.894][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.895][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.896][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.898][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.899][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.900][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.902][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.902][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.903][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.905][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.906][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:36.907][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:36.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.909][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.909][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.910][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.912][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.913][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.914][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.916][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.917][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.918][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.919][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.920][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.921][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.923][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.924][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.925][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.926][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.927][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:36.928][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:36.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.930][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.931][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:36.932][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:36.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.934][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.935][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.938][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.939][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.941][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.942][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.943][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.944][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.945][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.946][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.948][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.949][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.950][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.951][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.952][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:36.953][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:36.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.955][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.956][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.957][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:36.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.959][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.959][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.960][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:36.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.962][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.963][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.964][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:36.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.966][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.967][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.968][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:36.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.969][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.970][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.971][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:36.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.973][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.974][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:36.975][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:36.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.976][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.977][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:36.978][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:36.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.980][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.981][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.982][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:36.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.985][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:36.986][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:36.986][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:36.987][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:36.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.989][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.990][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:36.991][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:36.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.993][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.995][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:36.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:36.996][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:36.997][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:36.998][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:36.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.000][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.001][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:37.002][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:37.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.003][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.004][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.005][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.007][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.008][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.009][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.011][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.012][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.012][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.014][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.015][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.016][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.018][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.019][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:37.020][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:37.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.022][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.022][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:37.023][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:37.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.025][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.026][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:37.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:37.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:37.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:37.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:37.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:37.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:37.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.038][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:37.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:37.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.042][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:37.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:37.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.046][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:37.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:37.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.060][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:37.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:37.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:37.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:37.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.068][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:37.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:37.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:37.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:37.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:37.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:37.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:37.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:37.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.120][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.124][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.127][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:37.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:37.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.135][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:37.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:37.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:37.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:37.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:37.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:37.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:37.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:37.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.149][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:37.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:37.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.158][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-08-02 16:02:37.159][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:37.160][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-08-02 16:02:37.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:37.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:37.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:37.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:37.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:37.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:37.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-02 16:02:37.173][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-02 16:02:37.175][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-08-02 16:02:37.179][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-08-02 16:02:37.180][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-02 16:02:37.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:37.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:37.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:37.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:37.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:37.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:37.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:37.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:37.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:37.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:37.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:37.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:37.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:37.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:37.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:37.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:37.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:37.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:37.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:37.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:37.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:37.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:37.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:37.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-02 16:02:37.243][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-02 16:02:37.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:37.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:37.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:37.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:37.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:37.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:37.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:37.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:37.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:37.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:37.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:37.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.261][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:37.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:37.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.264][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:37.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:37.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.275][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:37.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:37.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.279][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:37.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:37.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:37.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:37.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:37.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:37.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.298][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.301][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.320][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.323][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:37.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:37.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:37.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:37.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.334][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:37.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:37.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:37.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:37.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.341][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:37.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:37.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.345][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:37.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:37.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.349][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:37.350][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:37.350][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:37.351][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:37.352][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:37.353][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:37.354][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:37.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.356][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.357][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:37.358][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:37.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.360][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.360][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.368][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.369][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:37.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:37.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.371][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.372][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:37.373][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:37.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.375][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.376][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.377][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.379][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.379][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.380][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.382][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.383][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.384][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.386][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.387][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.388][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.389][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.390][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.391][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.393][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.394][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:37.395][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:37.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.396][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.397][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:37.398][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:37.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.400][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.401][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:37.402][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:37.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.404][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.405][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:37.405][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:37.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.407][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.408][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:37.409][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:37.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.411][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.413][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.414][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.415][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:37.416][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:37.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.418][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.419][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:37.420][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:37.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.422][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.422][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.423][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.425][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.426][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.427][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.429][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.430][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.431][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.432][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.433][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.434][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.436][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.437][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.438][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.439][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.440][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:37.441][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:37.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.443][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.444][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:37.445][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:37.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.447][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.447][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:37.448][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:37.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.450][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.451][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:37.452][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:37.453][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:37.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:37.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.456][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.457][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:37.457][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:37.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.459][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.463][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.464][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:37.465][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:37.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.466][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.467][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:37.468][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:37.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.470][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.471][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.472][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.474][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.474][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.475][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.477][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.478][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.479][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.481][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.482][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.483][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.485][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.486][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.488][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.489][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:37.490][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:37.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.492][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.492][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:37.493][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:37.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.495][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.496][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:37.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:37.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:37.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:37.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:37.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:37.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:37.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.508][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:37.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:37.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.512][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:37.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:37.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.516][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:37.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:37.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.531][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:37.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:37.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.534][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:37.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:37.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:37.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:37.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:37.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:37.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:37.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:37.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:37.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:37.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.564][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.568][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.571][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.597][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.601][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.609][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:37.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:37.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:37.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:37.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:37.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:37.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:37.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:37.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:37.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:37.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:37.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:37.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.640][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-08-02 16:02:37.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:37.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:37.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:37.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:37.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:37.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:37.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:37.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:37.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:37.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:37.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:37.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.658][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:37.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:37.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.661][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:37.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:37.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:37.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:37.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.676][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:37.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:37.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:37.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:37.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:37.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:37.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.694][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.698][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.716][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.719][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:37.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:37.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.727][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:37.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:37.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:37.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:37.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.734][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:37.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:37.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.737][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:37.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:37.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.741][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:37.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:37.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.745][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:37.746][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:37.746][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:37.747][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:37.748][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:37.749][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:37.750][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:37.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.752][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.753][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:37.754][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:37.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.756][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.759][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.760][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:37.761][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:37.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.763][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.764][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:37.765][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:37.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.766][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.767][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.768][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.770][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.771][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.772][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.774][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.775][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.776][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.777][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.778][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.779][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.781][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.782][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.783][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.785][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.785][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:37.786][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:37.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.788][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.789][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:37.790][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:37.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.793][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:37.794][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:37.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.795][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.796][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:37.797][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:37.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.799][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.800][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:37.801][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:37.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.803][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.804][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.806][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.807][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:37.808][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:37.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.810][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.811][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:37.812][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:37.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.813][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.814][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.815][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.817][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.818][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.819][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:37.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.821][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.822][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.822][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.824][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.825][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.826][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.828][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.829][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.830][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.831][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.832][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:37.833][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:37.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.835][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.836][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:37.837][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:37.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.839][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.840][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:37.841][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:37.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.842][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.843][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:37.844][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:37.849][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:37.850][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:37.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.852][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.853][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:37.854][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:37.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.856][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.858][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.859][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.860][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:37.861][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:37.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.863][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.864][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:37.865][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:37.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.866][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.867][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.868][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.870][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.871][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.872][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.874][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.874][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.875][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.877][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.878][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.879][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.881][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.882][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:37.882][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:37.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.884][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.885][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:37.886][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:37.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.888][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.889][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:37.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:37.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:37.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:37.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:37.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:37.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:37.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.901][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:37.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:37.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.904][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:37.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:37.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.908][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:37.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:37.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:37.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.923][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:37.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:37.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:37.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:37.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.930][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:37.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:37.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:37.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:37.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:37.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:37.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:37.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:37.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:37.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:37.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:37.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.978][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.981][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.985][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:37.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:37.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:37.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.992][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:37.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:37.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:37.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:37.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:37.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:37.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:38.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:38.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:38.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:38.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:38.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:38.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.016][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-08-02 16:02:38.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-02 16:02:38.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:38.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:38.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:38.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:38.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:38.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-02 16:02:38.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:38.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:38.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:38.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:38.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.034][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:38.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:38.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.037][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:38.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:38.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:38.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:38.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:38.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:38.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.048][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:38.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:38.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.052][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:38.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:38.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:38.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:38.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:38.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:38.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:38.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:38.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:38.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:38.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.070][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:38.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:38.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.074][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:38.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:38.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:38.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:38.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:38.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:38.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:38.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:38.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:38.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:38.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.096][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:38.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:38.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.100][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:38.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:38.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:38.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:38.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.107][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:38.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:38.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.111][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:38.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:38.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:38.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:38.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.118][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:38.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:38.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.122][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:38.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:38.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.125][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:38.126][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-02 16:02:38.127][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-02 16:02:38.128][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-02 16:02:38.129][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-08-02 16:02:38.130][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:38.131][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:38.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.132][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.133][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:38.134][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:38.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.136][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.137][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:38.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:38.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.140][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:38.141][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:38.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.143][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.144][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:38.145][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:38.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.147][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.148][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:38.149][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:38.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.150][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.151][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:38.152][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:38.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.154][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.155][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:38.156][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:38.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.157][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.158][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:38.159][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:38.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.161][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.162][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:38.163][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:38.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.165][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.165][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:38.166][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:38.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.168][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.169][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:38.170][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:38.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.172][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.173][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:38.173][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:38.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.175][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.176][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:38.177][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:38.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.179][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.180][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:38.181][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:38.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.182][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.183][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:38.184][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:38.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.186][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.187][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:38.188][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:38.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.189][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.190][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:38.191][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:38.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.193][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:38.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:38.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.197][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.198][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:38.199][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-02 16:02:38.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.200][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.201][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:38.202][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:38.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.204][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.205][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:38.206][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:38.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.207][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.208][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:38.209][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:38.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.211][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.212][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:38.213][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:38.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.215][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.215][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:38.216][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:38.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.218][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.219][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-08-02 16:02:38.220][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-08-02 16:02:38.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.222][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.223][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:38.224][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-08-02 16:02:38.225][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:38.225][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:38.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.227][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.228][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:38.229][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:38.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.231][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:38.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:38.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.235][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.235][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:38.236][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:38.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.239][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:38.240][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:38.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.242][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.243][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:38.244][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:38.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.245][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.246][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:38.247][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:38.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.249][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.250][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:38.251][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:38.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.253][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.253][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:38.254][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:38.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.256][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.257][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:38.258][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:38.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.260][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.261][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:38.262][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:38.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.263][ef$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.264][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-08-02 16:02:38.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:38.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:38.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:38.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:38.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-02 16:02:38.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-02 16:02:38.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.276][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:38.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:38.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.280][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:38.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:38.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.284][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-02 16:02:38.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-02 16:02:38.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:38.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:38.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:38.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:38.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-02 16:02:38.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-02 16:02:38.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.299][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:38.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:38.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.302][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:38.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:38.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-02 16:02:38.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-02 16:02:38.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:38.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:38.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:38.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:38.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-02 16:02:38.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-02 16:02:38.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:38.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:38.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:38.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:38.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-02 16:02:38.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-02 16:02:38.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:38.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:38.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:38.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:38.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:38.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-02 16:02:38.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:38.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:38.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:38.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:38.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:38.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-02 16:02:38.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.358][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:38.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:38.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.362][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:38.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:38.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.366][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-02 16:02:38.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-02 16:02:38.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:38.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:38.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:38.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:38.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-02 16:02:38.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-02 16:02:38.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:38.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:38.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:38.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:38.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.388][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-02 16:02:38.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-02 16:02:38.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.397][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-08-02 16:02:38.397][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-02 16:02:38.398][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-02 16:02:38.404][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-02 16:02:38.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-02 16:02:38.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.408][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-02 16:02:38.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-02 16:02:38.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-02 16:02:38.411][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-02 16:02:38.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-02 16:02:38.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-02 16:02:38.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-02 16:02:38.417][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-08-02 16:02:38.418][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-08-02 16:02:38.419][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-02 16:02:38.420][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-02 16:02:38.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-02 16:02:38.422][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-02 16:02:38.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-02 16:02:38.423][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-02 16:02:38.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1264 ]
> 
> proc.time()
   user  system elapsed 
 58.494   1.166  61.735

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.15.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.15.1’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)