############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data orthos ### ############################################################################## ############################################################################## * checking for file ‘orthos/DESCRIPTION’ ... OK * preparing ‘orthos’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘orthosIntro.Rmd’ using rmarkdown Quitting from orthosIntro.Rmd:280-285 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `lock()`: ! Directory of lock file does not exist: '/var/cache/basilisk' --- Backtrace: ▆ 1. └─orthos::decomposeVar(...) 2. └─basilisk::basiliskStart(orthosenv, testload = "tensorflow") 3. └─basilisk::obtainEnvironmentPath(env) 4. └─basilisk::lockExternalDir(exdir, exclusive = FALSE) 5. └─dir.expiry::lockDirectory(path, ...) 6. └─filelock::lock(plock, exclusive = FALSE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'orthosIntro.Rmd' failed with diagnostics: Directory of lock file does not exist: '/var/cache/basilisk' --- failed re-building ‘orthosIntro.Rmd’ SUMMARY: processing the following file failed: ‘orthosIntro.Rmd’ Error: Vignette re-building failed. Execution halted