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###
### Running command:
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###   /home/biocbuild/bbs-3.22-bioc-gpu/R/bin/R CMD build --keep-empty-dirs --no-resave-data orthos
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* checking for file ‘orthos/DESCRIPTION’ ... OK
* preparing ‘orthos’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘orthosIntro.Rmd’ using rmarkdown
2025-09-01 13:46:56.261687: E external/local_xla/xla/stream_executor/cuda/cuda_dnn.cc:9261] Unable to register cuDNN factory: Attempting to register factory for plugin cuDNN when one has already been registered
2025-09-01 13:46:56.261737: E external/local_xla/xla/stream_executor/cuda/cuda_fft.cc:607] Unable to register cuFFT factory: Attempting to register factory for plugin cuFFT when one has already been registered
2025-09-01 13:46:56.263567: E external/local_xla/xla/stream_executor/cuda/cuda_blas.cc:1515] Unable to register cuBLAS factory: Attempting to register factory for plugin cuBLAS when one has already been registered
2025-09-01 13:46:56.270815: I tensorflow/core/platform/cpu_feature_guard.cc:182] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: AVX2 FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.
2025-09-01 13:46:57.062778: W tensorflow/compiler/tf2tensorrt/utils/py_utils.cc:38] TF-TRT Warning: Could not find TensorRT

Quitting from orthosIntro.Rmd:280-285 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! failed to load resource
  name: EH7869
  title: ContextEncoder_Human
  reason: 
---
Backtrace:
     ▆
  1. └─orthos::decomposeVar(...)
  2.   └─basilisk::basiliskRun(...)
  3.     └─orthos (local) fun(...)
  4.       ├─AnnotationHub::query(hub, query_keys)[[1]]
  5.       └─AnnotationHub::query(hub, query_keys)[[1]]
  6.         └─ExperimentHub (local) .local(x, i, j = j, ...)
  7.           ├─methods::callNextMethod(...)
  8.           │ └─base::eval(call, callEnv)
  9.           │   └─base::eval(call, callEnv)
 10.           └─AnnotationHub (local) .nextMethod(...)
 11.             └─AnnotationHub (local) .local(x, i, j = j, ...)
 12.               └─AnnotationHub:::.Hub_get1(...)
 13.                 └─base::tryCatch(...)
 14.                   └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 15.                     └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 16.                       └─value[[3L]](cond)
 17.                         └─base::tryCatch(...)
 18.                           └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 19.                             └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 20.                               └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'orthosIntro.Rmd' failed with diagnostics:
failed to load resource
  name: EH7869
  title: ContextEncoder_Human
  reason: 
--- failed re-building ‘orthosIntro.Rmd’

SUMMARY: processing the following file failed:
  ‘orthosIntro.Rmd’

Error: Vignette re-building failed.
Execution halted