############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 wiggleplotr ### ############################################################################## ############################################################################## * checking for file ‘wiggleplotr/DESCRIPTION’ ... OK * preparing ‘wiggleplotr’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘wiggleplotr.Rmd’ using rmarkdown Quitting from wiggleplotr.Rmd:169-173 [unnamed-chunk-16] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! Unexpected format to the list of available marts. Please check the following URL manually, and try ?listMarts for advice. http://jan2020.archive.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt --- Backtrace: ▆ 1. └─biomaRt::useMart("ENSEMBL_MART_ENSEMBL", host = "jan2020.archive.ensembl.org") 2. └─biomaRt:::.useMart(...) 3. └─biomaRt:::.listMarts(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'wiggleplotr.Rmd' failed with diagnostics: Unexpected format to the list of available marts. Please check the following URL manually, and try ?listMarts for advice. http://jan2020.archive.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt --- failed re-building ‘wiggleplotr.Rmd’ SUMMARY: processing the following file failed: ‘wiggleplotr.Rmd’ Error: Vignette re-building failed. Execution halted