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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data tradeSeq
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* checking for file ‘tradeSeq/DESCRIPTION’ ... OK
* preparing ‘tradeSeq’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘Monocle.Rmd’ using rmarkdown
--- finished re-building ‘Monocle.Rmd’

--- re-building ‘fitGAM.Rmd’ using rmarkdown
2025-11-21 17:57:46.810 R[69641:115200189] XType: Using static font registry.

Quitting from fitGAM.Rmd:152-159 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `reducer$value.cache[[as.character(idx)]] <- values`:
! wrong args for environment subassignment
---
Backtrace:
     ▆
  1. ├─tradeSeq::fitGAM(...)
  2. └─tradeSeq::fitGAM(...)
  3.   └─tradeSeq (local) .local(counts, ...)
  4.     └─tradeSeq:::.fitGAM(...)
  5.       ├─BiocParallel::bplapply(...)
  6.       └─BiocParallel::bplapply(...)
  7.         └─BiocParallel:::.bpinit(...)
  8.           ├─BiocParallel::bploop(...)
  9.           └─BiocParallel:::bploop.lapply(...)
 10.             └─BiocParallel:::.bploop_impl(...)
 11.               └─BiocParallel:::.collect_result(manager, reducer, progress, BPPARAM)
 12.                 ├─BiocParallel:::.reducer_add(reducer, njob, value)
 13.                 └─BiocParallel:::.reducer_add(reducer, njob, value)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'fitGAM.Rmd' failed with diagnostics:
wrong args for environment subassignment
--- failed re-building ‘fitGAM.Rmd’

--- re-building ‘multipleConditions.Rmd’ using rmarkdown
--- finished re-building ‘multipleConditions.Rmd’

--- re-building ‘tradeSeq.Rmd’ using rmarkdown
--- finished re-building ‘tradeSeq.Rmd’

SUMMARY: processing the following file failed:
  ‘fitGAM.Rmd’

Error: Vignette re-building failed.
Execution halted