############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data sesame ### ############################################################################## ############################################################################## * checking for file ‘sesame/DESCRIPTION’ ... OK * preparing ‘sesame’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘QC.Rmd’ using rmarkdown --- finished re-building ‘QC.Rmd’ --- re-building ‘inferences.Rmd’ using rmarkdown --- finished re-building ‘inferences.Rmd’ --- re-building ‘modeling.Rmd’ using rmarkdown --- finished re-building ‘modeling.Rmd’ --- re-building ‘nonhuman.Rmd’ using rmarkdown --- finished re-building ‘nonhuman.Rmd’ --- re-building ‘sesame.Rmd’ using rmarkdown Quitting from sesame.Rmd:223-232 [unnamed-chunk-6] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `stopAndCache()`: ! | File MSA.address either not found or needs to be cached to be | used in sesame. | Please make sure you have updated ExperimentHub and try | > sesameDataCache("MSA.address") | or download all data | > sesameDataCache() | to retrieve and cache needed sesame data. --- Backtrace: ▆ 1. └─sesameData::sesameData_getManifestGRanges("MSA") 2. └─sesameData::sesameDataGet(sprintf("%s.address", platform)) 3. ├─base::suppressMessages(log <- capture.output(obj <- .sesameDataGet(title))) 4. │ └─base::withCallingHandlers(...) 5. ├─utils::capture.output(obj <- .sesameDataGet(title)) 6. │ └─base::withVisible(...elt(i)) 7. └─sesameData:::.sesameDataGet(title) 8. └─sesameData:::stopAndCache(title) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'sesame.Rmd' failed with diagnostics: | File MSA.address either not found or needs to be cached to be | used in sesame. | Please make sure you have updated ExperimentHub and try | > sesameDataCache("MSA.address") | or download all data | > sesameDataCache() | to retrieve and cache needed sesame data. --- failed re-building ‘sesame.Rmd’ SUMMARY: processing the following file failed: ‘sesame.Rmd’ Error: Vignette re-building failed. Execution halted