############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL scGraphVerse ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’ * installing *source* package ‘scGraphVerse’ ... ** this is package ‘scGraphVerse’ version ‘0.99.19’ ** using staged installation ** libs using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c init.c -o init.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c regTree.c -o regTree.o regTree.c: In function ‘findBestSplit’: regTree.c:232:15: warning: variable ‘lc’ set but not used [-Wunused-but-set-variable] 232 | int last, lc, nl, nr, npopl, npopr; | ^~ regTree.c: In function ‘predictRegTree’: regTree.c:418:19: warning: unused variable ‘cbestsplit’ [-Wunused-variable] 418 | int i, k, m, *cbestsplit, s; | ^~~~~~~~~~ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c regrf.c -o regrf.o regrf.c: In function ‘regRF’: regrf.c:71:30: warning: unused variable ‘nodexts’ [-Wunused-variable] 71 | int *in, *nind, *nodex, *nodexts; | ^~~~~~~ regrf.c:71:22: warning: variable ‘nodex’ set but not used [-Wunused-but-set-variable] 71 | int *in, *nind, *nodex, *nodexts; | ^~~~~ regrf.c:69:10: warning: variable ‘oobpair’ set but not used [-Wunused-but-set-variable] 69 | int *oobpair, varImp, localImp, *varUsed, kk; | ^~~~~~~ regrf.c:67:61: warning: variable ‘nPerm’ set but not used [-Wunused-but-set-variable] 67 | int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm, | ^~~~~ regrf.c:67:31: warning: unused variable ‘jout’ [-Wunused-variable] 67 | int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm, | ^~~~ regrf.c:67:22: warning: unused variable ‘nOOB’ [-Wunused-variable] 67 | int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm, | ^~~~ regrf.c:67:15: warning: unused variable ‘mr’ [-Wunused-variable] 67 | int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm, | ^~ regrf.c:65:36: warning: unused variable ‘ytree’ [-Wunused-variable] 65 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini, *meanY, *varY, *ww; | ^~~~~ regrf.c:65:30: warning: variable ‘ytr’ set but not used [-Wunused-but-set-variable] 65 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini, *meanY, *varY, *ww; | ^~~ regrf.c:65:18: warning: variable ‘xtmp’ set but not used [-Wunused-but-set-variable] 65 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini, *meanY, *varY, *ww; | ^~~~ regrf.c:63:58: warning: variable ‘resOOB’ set but not used [-Wunused-but-set-variable] 63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB; | ^~~~~~ regrf.c:63:50: warning: unused variable ‘delta’ [-Wunused-variable] 63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB; | ^~~~~ regrf.c:63:38: warning: unused variable ‘ooberrperm’ [-Wunused-variable] 63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB; | ^~~~~~~~~~ regrf.c:63:30: warning: variable ‘ooberr’ set but not used [-Wunused-but-set-variable] 63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB; | ^~~~~~ regrf.c:63:18: warning: unused variable ‘resid’ [-Wunused-variable] 63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB; | ^~~~~ regrf.c:63:12: warning: variable ‘errb’ set but not used [-Wunused-but-set-variable] 63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB; | ^~~~ regrf.c:62:53: warning: unused variable ‘r’ [-Wunused-variable] 62 | double errts = 0.0, averrb, *meanYts, *varYts, r, *xrand, | ^ regrf.c:62:25: warning: variable ‘averrb’ set but not used [-Wunused-but-set-variable] 62 | double errts = 0.0, averrb, *meanYts, *varYts, r, *xrand, | ^~~~~~ regrf.c:62:12: warning: unused variable ‘errts’ [-Wunused-variable] 62 | double errts = 0.0, averrb, *meanYts, *varYts, r, *xrand, | ^~~~~ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -shared -L/home/biocbuild/R/R-4.5.0/lib -L/usr/local/lib -o scGraphVerse.so init.o regTree.o regrf.o -L/home/biocbuild/R/R-4.5.0/lib -lR installing to /home/biocbuild/R/R-4.5.0/site-library/00LOCK-scGraphVerse/00new/scGraphVerse/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scGraphVerse)