##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL scGraphVerse
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘scGraphVerse’ ...
** this is package ‘scGraphVerse’ version ‘0.99.19’
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.1.sdk’
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c init.c -o init.o
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c regTree.c -o regTree.o
regTree.c:232:15: warning: variable 'lc' set but not used [-Wunused-but-set-variable]
    int last, lc, nl, nr, npopl, npopr;
              ^
regTree.c:418:19: warning: unused variable 'cbestsplit' [-Wunused-variable]
    int i, k, m, *cbestsplit, s;
                  ^
2 warnings generated.
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c regrf.c -o regrf.o
regrf.c:62:12: warning: unused variable 'errts' [-Wunused-variable]
    double errts = 0.0, averrb,  *meanYts, *varYts, r, *xrand,
           ^
regrf.c:62:25: warning: variable 'averrb' set but not used [-Wunused-but-set-variable]
    double errts = 0.0, averrb,  *meanYts, *varYts, r, *xrand,
                        ^
regrf.c:62:53: warning: unused variable 'r' [-Wunused-variable]
    double errts = 0.0, averrb,  *meanYts, *varYts, r, *xrand,
                                                    ^
regrf.c:63:5: warning: variable 'errb' set but not used [-Wunused-but-set-variable]
          *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
           ^
regrf.c:63:11: warning: unused variable 'resid' [-Wunused-variable]
          *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
                 ^
regrf.c:63:23: warning: variable 'ooberr' set but not used [-Wunused-but-set-variable]
          *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
                             ^
regrf.c:63:31: warning: unused variable 'ooberrperm' [-Wunused-variable]
          *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
                                     ^
regrf.c:63:43: warning: unused variable 'delta' [-Wunused-variable]
          *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
                                                 ^
regrf.c:63:51: warning: variable 'resOOB' set but not used [-Wunused-but-set-variable]
          *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
                                                         ^
regrf.c:65:18: warning: variable 'xtmp' set but not used [-Wunused-but-set-variable]
    double *yb, *xtmp, *xb, *ytr, *ytree, *tgini, *meanY, *varY, *ww;
                 ^
regrf.c:65:30: warning: variable 'ytr' set but not used [-Wunused-but-set-variable]
    double *yb, *xtmp, *xb, *ytr, *ytree, *tgini, *meanY, *varY, *ww;
                             ^
regrf.c:65:36: warning: unused variable 'ytree' [-Wunused-variable]
    double *yb, *xtmp, *xb, *ytr, *ytree, *tgini, *meanY, *varY, *ww;
                                   ^
regrf.c:67:15: warning: unused variable 'mr' [-Wunused-variable]
    int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm,
              ^
regrf.c:67:22: warning: unused variable 'nOOB' [-Wunused-variable]
    int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm,
                     ^
regrf.c:67:31: warning: unused variable 'jout' [-Wunused-variable]
    int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm,
                              ^
regrf.c:67:61: warning: variable 'nPerm' set but not used [-Wunused-but-set-variable]
    int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm,
                                                            ^
regrf.c:69:10: warning: variable 'oobpair' set but not used [-Wunused-but-set-variable]
    int *oobpair, varImp, localImp, *varUsed, kk;
         ^
regrf.c:71:22: warning: variable 'nodex' set but not used [-Wunused-but-set-variable]
    int *in, *nind, *nodex, *nodexts;
                     ^
regrf.c:71:30: warning: unused variable 'nodexts' [-Wunused-variable]
    int *in, *nind, *nodex, *nodexts;
                             ^
19 warnings generated.
clang -arch arm64 -std=gnu2x -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o scGraphVerse.so init.o regTree.o regrf.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-scGraphVerse/00new/scGraphVerse/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scGraphVerse)