############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 rols ### ############################################################################## ############################################################################## * checking for file ‘rols/DESCRIPTION’ ... OK * preparing ‘rols’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘rols.Rmd’ using rmarkdown Quitting from rols.Rmd:20-26 [env] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `h()`: ! error in evaluating the argument 'X' in selecting a method for function 'lapply': error in evaluating the argument 'X' in selecting a method for function 'lapply': HTTP 404 Not Found. --- Backtrace: ▆ 1. ├─base::suppressMessages(nonto <- length(ol <- Ontologies())) 2. │ └─base::withCallingHandlers(...) 3. ├─rols::Ontologies() 4. ├─rols::Ontologies() 5. │ └─rols:::makeOntologies() 6. │ ├─rols:::.Ontologies(...) 7. │ │ └─methods::new(``, ...) 8. │ │ ├─methods::initialize(value, ...) 9. │ │ └─methods::initialize(value, ...) 10. │ ├─base::lapply(ols_requests(url, "ontologies"), ontologyFromJson) 11. │ └─rols:::ols_requests(url, "ontologies") 12. │ ├─base::unlist(...) 13. │ ├─base::lapply(...) 14. │ └─httr2::req_perform_iterative(...) 15. │ ├─base::tryCatch(...) 16. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 17. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 18. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 19. │ ├─rlang::try_fetch(...) 20. │ │ └─base::withCallingHandlers(...) 21. │ └─httr2::req_perform(req, path = get_path(i), mock = mock) 22. │ └─httr2:::handle_resp(req, resp, error_call = error_call) 23. │ └─rlang::cnd_signal(cnd) 24. │ └─rlang:::signal_abort(cnd) 25. │ └─base::signalCondition(cnd) 26. ├─base (local) ``(``) 27. └─base::.handleSimpleError(...) 28. └─base (local) h(simpleError(msg, call)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'rols.Rmd' failed with diagnostics: error in evaluating the argument 'X' in selecting a method for function 'lapply': error in evaluating the argument 'X' in selecting a method for function 'lapply': HTTP 404 Not Found. --- failed re-building ‘rols.Rmd’ SUMMARY: processing the following file failed: ‘rols.Rmd’ Error: Vignette re-building failed. Execution halted