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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data orthos
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* checking for file ‘orthos/DESCRIPTION’ ... OK
* preparing ‘orthos’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘orthosIntro.Rmd’ using rmarkdown
python-build: use openssl@3 from homebrew
python-build: use readline from homebrew
Downloading Python-3.12.12.tar.xz...
-> https://www.python.org/ftp/python/3.12.12/Python-3.12.12.tar.xz
Installing Python-3.12.12...
python-build: use tcl-tk from homebrew
python-build: use readline from homebrew
python-build: use zlib from xcode sdk

BUILD FAILED (OS X 13.7.7 using python-build 2.6.11-2-g1b7d2f0)

Inspect or clean up the working tree at /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/python-build.20251029234224.88932
Results logged to /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/python-build.20251029234224.88932.log

Last 10 log lines:
ld: warning: search path '/Users/biocbuild/.pyenv/versions/3.12.12/lib' not found
ld: Undefined symbols:
  _mkfifoat, referenced from:
      _os_mkfifo in 127.arm64.thinlto.o
  _mknodat, referenced from:
      _os_mknod in 127.arm64.thinlto.o
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [Programs/_freeze_module] Error 1
make[1]: *** [profile-gen-stamp] Error 2
make: *** [profile-run-stamp] Error 2

Quitting from orthosIntro.Rmd:280-285 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! installation of Python 3.12 failed
---
Backtrace:
    ▆
 1. └─orthos::decomposeVar(...)
 2.   └─basilisk::basiliskStart(orthosenv, testload = "tensorflow")
 3.     └─basilisk::obtainEnvironmentPath(env)
 4.       └─basilisk::setupBasiliskEnv(...)
 5.         ├─base::suppressMessages(install_python(version))
 6.         │ └─base::withCallingHandlers(...)
 7.         └─reticulate::install_python(version)
 8.           └─reticulate:::stopf("installation of Python %s failed", version)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'orthosIntro.Rmd' failed with diagnostics:
installation of Python 3.12 failed
--- failed re-building ‘orthosIntro.Rmd’

SUMMARY: processing the following file failed:
  ‘orthosIntro.Rmd’

Error: Vignette re-building failed.
Execution halted