############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 ontoProc ### ############################################################################## ############################################################################## * checking for file ‘ontoProc/DESCRIPTION’ ... OK * preparing ‘ontoProc’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘ontoProc.Rmd’ using rmarkdown Warning in doTryCatch(return(expr), name, parentenv, handler) : zero-length arrow is of indeterminate angle and so skipped --- finished re-building ‘ontoProc.Rmd’ --- re-building ‘owlents.Rmd’ using rmarkdown Quitting from owlents.Rmd:33-46 [getcl] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `py_call_impl()`: ! owlready2.base.OwlReadyOntologyParsingError: NTriples parsing error (or unrecognized file format) in /tmp/RtmpiHER82/file3fa0d26a97e78. Run `reticulate::py_last_error()` for details. --- Backtrace: ▆ 1. └─ontoProc::setup_entities(tf) 2. └─o2$get_ontology(owlfn)$load() 3. └─reticulate:::py_call_impl(callable, call_args$unnamed, call_args$named) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'owlents.Rmd' failed with diagnostics: owlready2.base.OwlReadyOntologyParsingError: NTriples parsing error (or unrecognized file format) in /tmp/RtmpiHER82/file3fa0d26a97e78. Run `reticulate::py_last_error()` for details. --- failed re-building ‘owlents.Rmd’ SUMMARY: processing the following file failed: ‘owlents.Rmd’ Error: Vignette re-building failed. Execution halted