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###
### Running command:
###
###   chmod a+r linkSet -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data linkSet
###
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* checking for file 'linkSet/DESCRIPTION' ... OK
* preparing 'linkSet':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'hic_workthrough.Rmd' using rmarkdown

Quitting from hic_workthrough.Rmd:94-132 [setup-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `system2()`:
! '"zcat"' not found
---
Backtrace:
    ▆
 1. └─linkSet::readvalidPairs(hic_file, format = "pair")
 2.   └─base::system2("zcat", args = c(file, "| grep '^#'"), stdout = TRUE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'hic_workthrough.Rmd' failed with diagnostics:
'"zcat"' not found
--- failed re-building 'hic_workthrough.Rmd'

--- re-building 'linkSet.Rmd' using rmarkdown
--- finished re-building 'linkSet.Rmd'

SUMMARY: processing the following file failed:
  'hic_workthrough.Rmd'

Error: Vignette re-building failed.
Execution halted