############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 limpca ### ############################################################################## ############################################################################## * checking for file ‘limpca/DESCRIPTION’ ... OK * preparing ‘limpca’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Trout.Rmd’ using rmarkdown Warning: ggrepel: 64 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 71 unlabeled data points (too many overlaps). Consider increasing max.overlaps Quitting from Trout.Rmd:310-317 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `S7::prop(x, "meta")[[i]]`: ! subscript out of bounds --- Backtrace: ▆ 1. └─limpca::pcaLoading1dPlot(...) 2. ├─fig[[1]] 3. └─ggplot2 (local) `[[.ggplot2::gg`(fig, 1) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Trout.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘Trout.Rmd’ --- re-building ‘UCH.Rmd’ using rmarkdown Quitting from UCH.Rmd:294-302 [Loadings] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `S7::prop(x, "meta")[[i]]`: ! subscript out of bounds --- Backtrace: ▆ 1. └─limpca::pcaLoading1dPlot(...) 2. ├─fig[[1]] 3. └─ggplot2 (local) `[[.ggplot2::gg`(fig, 1) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'UCH.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘UCH.Rmd’ --- re-building ‘limpca.Rmd’ using rmarkdown --- finished re-building ‘limpca.Rmd’ SUMMARY: processing the following files failed: ‘Trout.Rmd’ ‘UCH.Rmd’ Error: Vignette re-building failed. Execution halted