############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data infinityFlow ### ############################################################################## ############################################################################## * checking for file ‘infinityFlow/DESCRIPTION’ ... OK * preparing ‘infinityFlow’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘basic_usage.Rmd’ using rmarkdown Quitting from basic_usage.Rmd:209-222 [pipeline execution] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! 'xgb.Booster.complete' is not an exported object from 'namespace:xgboost' --- Backtrace: ▆ 1. └─infinityFlow::infinity_flow(...) 2. └─infinityFlow:::predict_from_models(...) 3. ├─base::do.call(cbind, pblapply(cl = cl, X = models[[i]], FUN = fun)) 4. └─pbapply::pblapply(cl = cl, X = models[[i]], FUN = fun) 5. └─base::lapply(X, FUN, ...) 6. └─infinityFlow (local) FUN(X[[i]], ...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'basic_usage.Rmd' failed with diagnostics: 'xgb.Booster.complete' is not an exported object from 'namespace:xgboost' --- failed re-building ‘basic_usage.Rmd’ --- re-building ‘training_non_default_regression_models.Rmd’ using rmarkdown Warning: closing unused connection 5 (<-localhost:11135) Quitting from training_non_default_regression_models.Rmd:156-174 [pipeline execution] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! 'xgb.Booster.complete' is not an exported object from 'namespace:xgboost' --- Backtrace: ▆ 1. └─infinityFlow::infinity_flow(...) 2. └─infinityFlow:::predict_from_models(...) 3. ├─base::do.call(cbind, pblapply(cl = cl, X = models[[i]], FUN = fun)) 4. └─pbapply::pblapply(cl = cl, X = models[[i]], FUN = fun) 5. └─base::lapply(X, FUN, ...) 6. └─infinityFlow (local) FUN(X[[i]], ...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'training_non_default_regression_models.Rmd' failed with diagnostics: 'xgb.Booster.complete' is not an exported object from 'namespace:xgboost' --- failed re-building ‘training_non_default_regression_models.Rmd’ SUMMARY: processing the following files failed: ‘basic_usage.Rmd’ ‘training_non_default_regression_models.Rmd’ Error: Vignette re-building failed. Execution halted