############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 hiAnnotator ### ############################################################################## ############################################################################## * checking for file ‘hiAnnotator/DESCRIPTION’ ... OK * preparing ‘hiAnnotator’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Intro.Rmd’ using knitr Quitting from Intro.Rmd:47-68 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `keepSeqlevels()`: ! could not find function "keepSeqlevels" --- Backtrace: ▆ 1. └─hiAnnotator::getNearestFeature(alldata.rd, genes.rd, "NearestGene") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Intro.Rmd' failed with diagnostics: could not find function "keepSeqlevels" --- failed re-building ‘Intro.Rmd’ SUMMARY: processing the following file failed: ‘Intro.Rmd’ Error: Vignette re-building failed. Execution halted