############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 gemma.R ### ############################################################################## ############################################################################## * checking for file ‘gemma.R/DESCRIPTION’ ... OK * preparing ‘gemma.R’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘gemma.R.Rmd’ using rmarkdown Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps --- finished re-building ‘gemma.R.Rmd’ --- re-building ‘metadata.Rmd’ using rmarkdown Quitting from metadata.Rmd:131-142 [unnamed-chunk-6] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `sum()`: ! invalid 'type' (list) of argument --- Backtrace: ▆ 1. └─... %>% sum ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'metadata.Rmd' failed with diagnostics: invalid 'type' (list) of argument --- failed re-building ‘metadata.Rmd’ --- re-building ‘metanalysis.Rmd’ using rmarkdown --- finished re-building ‘metanalysis.Rmd’ SUMMARY: processing the following file failed: ‘metadata.Rmd’ Error: Vignette re-building failed. Execution halted