############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowGate ### ############################################################################## ############################################################################## * checking for file ‘flowGate/DESCRIPTION’ ... OK * preparing ‘flowGate’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘flowGate.Rmd’ using rmarkdown Quitting from flowGate.Rmd:481-483 [unnamed-chunk-10] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `add_ggcyto()`: ! object '+.gg' not found --- Backtrace: ▆ 1. ├─ggplot2::autoplot(gs[[1]], gate = "Leukocytes") 2. └─ggcyto:::autoplot.GatingHierarchy(gs[[1]], gate = "Leukocytes") 3. ├─BiocGenerics::lapply(...) 4. └─base::lapply(...) 5. └─ggcyto (local) FUN(X[[i]], ...) 6. └─ggcyto:::autoplot.GatingSet(object, gate, y = y, ...) 7. ├─ggcyto::ggcyto(object, mapping, ...) 8. └─ggcyto:::ggcyto.GatingHierarchy(object, mapping, ...) 9. ├─ggcyto::ggcyto(data, ...) 10. └─ggcyto:::ggcyto.GatingSet(data, ...) 11. └─ggcyto:::ggcyto.flowSet(data = data, mapping = mapping, ...) 12. ├─p + ggcyto_par_default() 13. └─p + ggcyto_par_default() 14. └─ggcyto:::add_ggcyto(e1, e2, e2name) 15. ├─e1 + e2.new 16. └─e1 + e2.new 17. └─ggcyto:::add_ggcyto(e1, e2, e2name) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'flowGate.Rmd' failed with diagnostics: object '+.gg' not found --- failed re-building ‘flowGate.Rmd’ SUMMARY: processing the following file failed: ‘flowGate.Rmd’ Error: Vignette re-building failed. Execution halted