############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL epistasisGA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘epistasisGA’ ... ** this is package ‘epistasisGA’ version ‘1.11.2’ ** using staged installation ** libs using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ using SDK: ‘MacOSX11.3.1.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/bigmemory/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/bigmemory/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c epistasisGA.cpp -o epistasisGA.o epistasisGA.cpp:970:17: warning: 'is_finite' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] !arma::is_finite(n_case_high_risk) | !arma::is_finite(n_comp_high_risk)){ ^ /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite' has been explicitly marked deprecated here [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]] ^ epistasisGA.cpp:970:54: warning: 'is_finite' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] !arma::is_finite(n_case_high_risk) | !arma::is_finite(n_comp_high_risk)){ ^ /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite' has been explicitly marked deprecated here [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]] ^ epistasisGA.cpp:1045:68: warning: 'is_finite' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] if ( (fitness_score <= 0) | R_isnancpp(fitness_score) | !arma::is_finite(fitness_score) ){ ^ /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite' has been explicitly marked deprecated here [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]] ^ epistasisGA.cpp:1399:55: warning: 'is_finite' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] if ( (s <= 0) | (R_isnancpp(s)) | (!arma::is_finite(s)) | any(H_Einv_diag <= 0)){ ^ /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite' has been explicitly marked deprecated here [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]] ^ 4 warnings generated. clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o epistasisGA.so RcppExports.o epistasisGA.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-epistasisGA/00new/epistasisGA/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (epistasisGA)