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###
### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data crumblr
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* checking for file ‘crumblr/DESCRIPTION’ ... OK
* preparing ‘crumblr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘crumblr.Rmd’ using rmarkdown
2025-10-29 23:17:37.107 R[81661:672013005] XType: com.apple.fonts is not accessible.
2025-10-29 23:17:37.107 R[81661:672013005] XType: XTFontStaticRegistry is enabled.

Quitting from crumblr.Rmd:154-163 [treeTest]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `adjust_hclust_tip.edge.len()`:
! could not find function "adjust_hclust_tip.edge.len"
---
Backtrace:
    ▆
 1. └─crumblr::plotTreeTest(res)
 2.   └─ggtree::ggtree(tree, branch.length = "none")
 3.     ├─base::suppressWarnings(...)
 4.     │ └─base::withCallingHandlers(...)
 5.     ├─ggplot2::ggplot(...)
 6.     └─ggplot2:::ggplot.default(...)
 7.       ├─ggplot2::fortify(data, ...)
 8.       └─ggtree:::fortify.treedata(data, ...)
 9.         └─ggtree:::fortify.phylo(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'crumblr.Rmd' failed with diagnostics:
could not find function "adjust_hclust_tip.edge.len"
--- failed re-building ‘crumblr.Rmd’

--- re-building ‘crumblr_theory.Rmd’ using rmarkdown
--- finished re-building ‘crumblr_theory.Rmd’

--- re-building ‘integration.Rmd’ using rmarkdown
--- finished re-building ‘integration.Rmd’

SUMMARY: processing the following file failed:
  ‘crumblr.Rmd’

Error: Vignette re-building failed.
Execution halted