############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ccImpute ### ############################################################################## ############################################################################## * checking for file ‘ccImpute/DESCRIPTION’ ... OK * preparing ‘ccImpute’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘ccImpute.Rmd’ using rmarkdown Quitting from ccImpute.Rmd:67-93 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `h5_read_attribute()`: ! argument "bit64conversion" is missing, with no default --- Backtrace: ▆ 1. └─scRNAseq::UsoskinBrainData() 2. └─scRNAseq::fetchDataset("usoskin-brain-2015", "2023-12-19", realize.assays = TRUE) 3. └─alabaster.base::altReadObject(...) 4. └─scRNAseq (local) FUN(path, ...) 5. └─alabaster.base::readObject(...) 6. └─alabaster.sce (local) meth(path, metadata = metadata, ...) 7. └─alabaster.se::readRangedSummarizedExperiment(...) 8. └─alabaster.se::readSummarizedExperiment(...) 9. └─alabaster.base::altReadObject(...) 10. └─scRNAseq (local) FUN(path, ...) 11. └─alabaster.base::readObject(...) 12. └─alabaster.matrix (local) meth(path, metadata = metadata, ...) 13. └─(function() {... 14. └─alabaster.base::h5_read_attribute(ghandle, "type") 15. └─rhdf5::H5Aread(ahandle, bit64conversion = bit64conversion) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'ccImpute.Rmd' failed with diagnostics: argument "bit64conversion" is missing, with no default --- failed re-building ‘ccImpute.Rmd’ SUMMARY: processing the following file failed: ‘ccImpute.Rmd’ Error: Vignette re-building failed. Execution halted