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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 biodbHmdb
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* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* preparing ‘biodbHmdb’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘biodbHmdb.Rmd’ using rmarkdown
INFO  [16:29:54.307] Loading definitions from package biodb version 1.17.1.
INFO  [16:29:55.822] Loading definitions from package biodbChebi version 1.15.1.
INFO  [16:29:55.859] Loading definitions from package biodbHmdb version 1.15.1.
INFO  [16:29:55.896] Loading definitions from package biodbNcbi version 1.13.1.
INFO  [16:29:55.923] Loading definitions from package biodbNci version 1.13.1.
INFO  [16:29:55.932] Loading definitions from package biodbUniprot version 1.15.1.
INFO  [16:29:56.090] Extract whole database of hmdb.metabolites.
INFO  [16:29:56.091] Extracting content of downloaded',
                    ' HMDB metabolite database...

Quitting from biodbHmdb.Rmd:76-78 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `private$doExtractDownload()`:
! attempt to apply non-function
---
Backtrace:
    ▆
 1. └─conn$getNbEntries()
 2.   └─private$doGetNbEntries(count = count)
 3.     └─self$getEntryIds()
 4.       └─private$doGetEntryIds(max.results = max.results, ...)
 5.         └─self$download()
 6.           └─private$doExtractDownload()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'biodbHmdb.Rmd' failed with diagnostics:
attempt to apply non-function
--- failed re-building ‘biodbHmdb.Rmd’

SUMMARY: processing the following file failed:
  ‘biodbHmdb.Rmd’

Error: Vignette re-building failed.
Execution halted