############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data affy ### ############################################################################## ############################################################################## * checking for file ‘affy/DESCRIPTION’ ... OK * preparing ‘affy’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘affy.Rnw’ using Sweave Loading required package: BiocGenerics Loading required package: generics Attaching package: ‘generics’ The following objects are masked from ‘package:base’: as.difftime, as.factor, as.ordered, intersect, is.element, setdiff, setequal, union Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, saveRDS, table, tapply, unique, unsplit, which.max, which.min Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Error: processing vignette 'affy.Rnw' failed with diagnostics: chunk 6 Error in getCdfInfo(object) : Could not obtain CDF environment, problems encountered: Specified environment does not contain HG_U95Av2 Library - package hgu95av2cdf not installed Bioconductor - hgu95av2cdf not available --- failed re-building ‘affy.Rnw’ --- re-building ‘builtinMethods.Rnw’ using Sweave --- finished re-building ‘builtinMethods.Rnw’ --- re-building ‘customMethods.Rnw’ using Sweave --- finished re-building ‘customMethods.Rnw’ --- re-building ‘vim.Rnw’ using Sweave --- finished re-building ‘vim.Rnw’ SUMMARY: processing the following file failed: ‘affy.Rnw’ Error: Vignette re-building failed. Execution halted