############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data StatescopeR ### ############################################################################## ############################################################################## * checking for file ‘StatescopeR/DESCRIPTION’ ... OK * preparing ‘StatescopeR’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘StatescopeR.Rmd’ using rmarkdown python-build: use openssl from homebrew python-build: use readline from homebrew Downloading Python-3.6.15.tar.xz... -> https://www.python.org/ftp/python/3.6.15/Python-3.6.15.tar.xz error: failed to download Python-3.6.15.tar.xz BUILD FAILED (OS X 13.7.8 using python-build 2.6.16-3-g3b25462) Inspect or clean up the working tree at /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/python-build.20251212175412.46767 Results logged to /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/python-build.20251212175412.46767.log Last 10 log lines: /var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/python-build.20251212175412.46767 /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpWWcbpA/Rbuild971823788887/StatescopeR/vignettes curl: (92) HTTP/2 stream 1 was not closed cleanly: PROTOCOL_ERROR (err 1) Quitting from StatescopeR.Rmd:125-152 [Prepare StatescopeR input] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! installation of Python 3.6 failed --- Backtrace: ▆ 1. └─StatescopeR::select_genes(scRNAseq, 3L, 5L, labels = scRNAseq$`cell type`) 2. └─basilisk::basiliskStart(autogenes, testload = c("autogenes")) 3. └─basilisk::obtainEnvironmentPath(env) 4. └─basilisk::setupBasiliskEnv(...) 5. ├─base::suppressMessages(install_python(version)) 6. │ └─base::withCallingHandlers(...) 7. └─reticulate::install_python(version) 8. └─reticulate:::stopf("installation of Python %s failed", version) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'StatescopeR.Rmd' failed with diagnostics: installation of Python 3.6 failed --- failed re-building ‘StatescopeR.Rmd’ SUMMARY: processing the following file failed: ‘StatescopeR.Rmd’ Error: Vignette re-building failed. Execution halted