############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data SpatialDecon ### ############################################################################## ############################################################################## * checking for file ‘SpatialDecon/DESCRIPTION’ ... OK * preparing ‘SpatialDecon’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘SpatialDecon_vignette.Rmd’ using rmarkdown Quitting from SpatialDecon_vignette.Rmd:139-154 [downloadmatrix] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `file()`: ! cannot open the connection to 'https://raw.github.com/Nanostring-Biostats/CellProfileLibrary/master/Mouse/Mouse_datasets_metadata.csv' --- Backtrace: ▆ 1. └─SpatialDecon::download_profile_matrix(...) 2. └─utils::read.csv(...) 3. └─utils::read.table(...) 4. └─base::file(file, "rt") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'SpatialDecon_vignette.Rmd' failed with diagnostics: cannot open the connection to 'https://raw.github.com/Nanostring-Biostats/CellProfileLibrary/master/Mouse/Mouse_datasets_metadata.csv' --- failed re-building ‘SpatialDecon_vignette.Rmd’ --- re-building ‘SpatialDecon_vignette_NSCLC.Rmd’ using rmarkdown Quitting from SpatialDecon_vignette_NSCLC.Rmd:132-147 [downloadmatrix] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `download_data_intern()`: ! Service Unavailable (HTTP 503). --- Backtrace: ▆ 1. └─SpatialDecon::download_profile_matrix(...) 2. ├─base::suppressMessages(...) 3. │ └─base::withCallingHandlers(...) 4. └─repmis::source_data(...) 5. └─repmis:::download_data_intern(url = url, sha1 = sha1, temp_file = temp_file) 6. └─httr::stop_for_status(request) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'SpatialDecon_vignette_NSCLC.Rmd' failed with diagnostics: Service Unavailable (HTTP 503). --- failed re-building ‘SpatialDecon_vignette_NSCLC.Rmd’ SUMMARY: processing the following files failed: ‘SpatialDecon_vignette.Rmd’ ‘SpatialDecon_vignette_NSCLC.Rmd’ Error: Vignette re-building failed. Execution halted