############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SeqArray ### ############################################################################## ############################################################################## * checking for file ‘SeqArray/DESCRIPTION’ ... OK * preparing ‘SeqArray’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘OverviewSlides.Rmd’ using rmarkdown --- finished re-building ‘OverviewSlides.Rmd’ --- re-building ‘SeqArray.Rmd’ using rmarkdown Quitting from SeqArray.Rmd:293-299 [unnamed-chunk-11] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `seqAsVCF()`: ! Please install VariantAnnotation to use this function --- Backtrace: ▆ 1. └─SeqArray::seqAsVCF(file, chr.prefix = "chr") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'SeqArray.Rmd' failed with diagnostics: Please install VariantAnnotation to use this function --- failed re-building ‘SeqArray.Rmd’ --- re-building ‘SeqArrayTutorial.Rmd’ using rmarkdown --- finished re-building ‘SeqArrayTutorial.Rmd’ SUMMARY: processing the following file failed: ‘SeqArray.Rmd’ Error: Vignette re-building failed. Execution halted