############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 SGCP ### ############################################################################## ############################################################################## * checking for file ‘SGCP/DESCRIPTION’ ... OK * preparing ‘SGCP’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘SGCP.Rmd’ using rmarkdown Quitting from SGCP.Rmd:395-398 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `print()`: ! unused argument (useS4 = FALSE) --- Backtrace: ▆ 1. ├─SGCP::SGCP_ezPLOT(...) 2. │ └─SGCP:::SGCP_plot2excel(...) 3. │ ├─methods::show(pl) 4. │ └─methods::show(pl) 5. │ └─methods::showDefault(object) 6. │ ├─base::print(object, useS4 = FALSE) 7. │ └─base::print.default(object, useS4 = FALSE) 8. ├─base (local) ``(x, useS4 = FALSE) 9. └─ggplot2:::print.ggproto(x, useS4 = FALSE) 10. └─x$print(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'SGCP.Rmd' failed with diagnostics: unused argument (useS4 = FALSE) --- failed re-building ‘SGCP.Rmd’ SUMMARY: processing the following file failed: ‘SGCP.Rmd’ Error: Vignette re-building failed. Execution halted