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###
### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RgnTX
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* checking for file ‘RgnTX/DESCRIPTION’ ... OK
* preparing ‘RgnTX’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘RgnTX.Rmd’ using rmarkdown

Quitting from RgnTX.Rmd:738-757 [unnamed-chunk-30]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! subscript contains invalid names
---
Backtrace:
     ▆
  1. ├─cds.tx0[trans.ids]
  2. └─cds.tx0[trans.ids]
  3.   ├─methods::callNextMethod(x = x, i = i)
  4.   │ └─base::eval(call, callEnv)
  5.   │   └─base::eval(call, callEnv)
  6.   └─S4Vectors (local) .nextMethod(x = x, i = i)
  7.     └─S4Vectors:::subset_along_ROWS(x, i, drop = drop)
  8.       ├─S4Vectors::extractROWS(x, i)
  9.       └─GenomicRanges (local) extractROWS(x, i)
 10.         └─IRanges (local) METHOD(x, i)
 11.           └─S4Vectors::normalizeSingleBracketSubscript(i, x, as.NSBS = TRUE)
 12.             ├─S4Vectors::NSBS(...)
 13.             └─S4Vectors::NSBS(...)
 14.               └─S4Vectors:::.subscript_error("subscript contains invalid ", what)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RgnTX.Rmd' failed with diagnostics:
subscript contains invalid names
--- failed re-building ‘RgnTX.Rmd’

SUMMARY: processing the following file failed:
  ‘RgnTX.Rmd’

Error: Vignette re-building failed.
Execution halted