##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 PRONE
###
##############################################################################
##############################################################################


* checking for file ‘PRONE/DESCRIPTION’ ... OK
* preparing ‘PRONE’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Differential_Expression.Rmd’ using rmarkdown

Quitting from Differential_Expression.Rmd:209-217 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Differential_Expression.Rmd' failed with diagnostics:
The `axis.title.x` theme element must be a <element_text> object.
--- failed re-building ‘Differential_Expression.Rmd’

--- re-building ‘Imputation.Rmd’ using rmarkdown
--- finished re-building ‘Imputation.Rmd’

--- re-building ‘Normalization.Rmd’ using rmarkdown
--- finished re-building ‘Normalization.Rmd’

--- re-building ‘PRONE.Rmd’ using rmarkdown
--- finished re-building ‘PRONE.Rmd’

--- re-building ‘Preprocessing.Rmd’ using rmarkdown
--- finished re-building ‘Preprocessing.Rmd’

--- re-building ‘Spike_In_Data.Rmd’ using rmarkdown
--- finished re-building ‘Spike_In_Data.Rmd’

SUMMARY: processing the following file failed:
  ‘Differential_Expression.Rmd’

Error: Vignette re-building failed.
Execution halted