############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 OmicsMLRepoR ### ############################################################################## ############################################################################## * checking for file ‘OmicsMLRepoR/DESCRIPTION’ ... OK * preparing ‘OmicsMLRepoR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Quickstart.Rmd’ using rmarkdown Quitting from Quickstart.Rmd:109-112 [unnamed-chunk-6] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `h()`: ! error in evaluating the argument 'x' in selecting a method for function 'nrow': non-character argument --- Backtrace: ▆ 1. ├─base::nrow(tree_filter(cmd, disease, "Colorectal Carcinoma")) 2. ├─OmicsMLRepoR::tree_filter(cmd, disease, "Colorectal Carcinoma") 3. │ └─OmicsMLRepoR:::.getOntos(.data, feat_name) 4. │ ├─base::unlist(strsplit(ontos, "\\|")) 5. │ └─base::strsplit(ontos, "\\|") 6. └─base::.handleSimpleError(...) 7. └─base (local) h(simpleError(msg, call)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Quickstart.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'nrow': non-character argument --- failed re-building ‘Quickstart.Rmd’ SUMMARY: processing the following file failed: ‘Quickstart.Rmd’ Error: Vignette re-building failed. Execution halted