############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r MultiAssayExperiment -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MultiAssayExperiment ### ############################################################################## ############################################################################## * checking for file 'MultiAssayExperiment/DESCRIPTION' ... OK * preparing 'MultiAssayExperiment': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'MultiAssayExperiment.Rmd' using rmarkdown Quitting from MultiAssayExperiment.Rmd:979-981 [longForm_colDataCols_example] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `.matchAddColData()`: ! argument "check.names" is missing, with no default --- Backtrace: ▆ 1. ├─BiocGenerics::longForm(myMultiAssay[, , 1:2], colDataCols = "age") 2. └─MultiAssayExperiment::longForm(myMultiAssay[, , 1:2], colDataCols = "age") 3. └─MultiAssayExperiment (local) .local(object, ...) 4. └─MultiAssayExperiment:::.matchAddColData(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MultiAssayExperiment.Rmd' failed with diagnostics: argument "check.names" is missing, with no default --- failed re-building 'MultiAssayExperiment.Rmd' --- re-building 'MultiAssayExperiment_cheatsheet.Rmd' using rmarkdown --- finished re-building 'MultiAssayExperiment_cheatsheet.Rmd' --- re-building 'QuickStartMultiAssay.Rmd' using rmarkdown Quitting from QuickStartMultiAssay.Rmd:288-293 [longform_example] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `.matchAddColData()`: ! argument "check.names" is missing, with no default --- Backtrace: ▆ 1. ├─BiocGenerics::longForm(...) 2. └─MultiAssayExperiment::longForm(...) 3. └─MultiAssayExperiment (local) .local(object, ...) 4. └─MultiAssayExperiment:::.matchAddColData(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'QuickStartMultiAssay.Rmd' failed with diagnostics: argument "check.names" is missing, with no default --- failed re-building 'QuickStartMultiAssay.Rmd' --- re-building 'UsingHDF5Array.Rmd' using rmarkdown --- finished re-building 'UsingHDF5Array.Rmd' SUMMARY: processing the following files failed: 'MultiAssayExperiment.Rmd' 'QuickStartMultiAssay.Rmd' Error: Vignette re-building failed. Execution halted