############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Ibex ### ############################################################################## ############################################################################## * checking for file ‘Ibex/DESCRIPTION’ ... OK * preparing ‘Ibex’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Ibex.Rmd’ using knitr Requirement already satisfied: pip in /Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.21.5/Ibex/0.99.32/IbexEnv/lib/python3.9/site-packages (23.0.1) Collecting pip Using cached pip-25.2-py3-none-any.whl (1.8 MB) Collecting wheel Using cached wheel-0.45.1-py3-none-any.whl (72 kB) Requirement already satisfied: setuptools in /Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.21.5/Ibex/0.99.32/IbexEnv/lib/python3.9/site-packages (79.0.1) Collecting setuptools Using cached setuptools-80.9.0-py3-none-any.whl (1.2 MB) Installing collected packages: wheel, setuptools, pip Attempting uninstall: setuptools Found existing installation: setuptools 79.0.1 Uninstalling setuptools-79.0.1: Successfully uninstalled setuptools-79.0.1 Attempting uninstall: pip Found existing installation: pip 23.0.1 Uninstalling pip-23.0.1: Successfully uninstalled pip-23.0.1 Successfully installed pip-25.2 setuptools-80.9.0 wheel-0.45.1 Collecting keras==3.6.* Using cached keras-3.6.0-py3-none-any.whl.metadata (5.8 kB) ERROR: Ignored the following versions that require a different python version: 3.11.0 Requires-Python >=3.10; 3.11.1 Requires-Python >=3.10; 3.11.2 Requires-Python >=3.10; 3.11.3 Requires-Python >=3.10 ERROR: Could not find a version that satisfies the requirement tensorflow==2.18.* (from versions: 2.5.0, 2.5.1, 2.5.2, 2.5.3, 2.6.0rc0, 2.6.0rc1, 2.6.0rc2, 2.6.0, 2.6.1, 2.6.2, 2.6.3, 2.6.4, 2.6.5, 2.7.0rc0, 2.7.0rc1, 2.7.0, 2.7.1, 2.7.2, 2.7.3, 2.7.4, 2.8.0rc0, 2.8.0rc1, 2.8.0, 2.8.1, 2.8.2, 2.8.3, 2.8.4, 2.9.0rc0, 2.9.0rc1, 2.9.0rc2, 2.9.0, 2.9.1, 2.9.2, 2.9.3, 2.10.0rc0, 2.10.0rc1, 2.10.0rc2, 2.10.0rc3, 2.10.0, 2.10.1, 2.11.0rc0, 2.11.0rc1, 2.11.0rc2, 2.11.0, 2.11.1, 2.12.0rc0, 2.12.0rc1, 2.12.0, 2.12.1, 2.13.0rc0, 2.13.0rc1, 2.13.0rc2, 2.13.0, 2.13.1, 2.14.0rc0, 2.14.0rc1, 2.14.0, 2.14.1, 2.15.0rc0, 2.15.0rc1, 2.15.0, 2.15.1, 2.16.0rc0, 2.16.1, 2.16.2) ERROR: No matching distribution found for tensorflow==2.18.* Quitting from Ibex.Rmd:207-229 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! Error installing package(s): "'keras==3.6.*'", "'tensorflow==2.18.*'", "'h5py==3.13'", "'numpy==1.26'" --- Backtrace: ▆ 1. └─Ibex::Ibex_matrix(...) 2. └─basilisk::basiliskRun(...) 3. └─basilisk::basiliskStart(...) 4. └─basilisk::obtainEnvironmentPath(env) 5. └─basilisk::setupBasiliskEnv(...) 6. └─reticulate::virtualenv_create(...) 7. └─reticulate:::pip_install(python, packages) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Ibex.Rmd' failed with diagnostics: Error installing package(s): "'keras==3.6.*'", "'tensorflow==2.18.*'", "'h5py==3.13'", "'numpy==1.26'" --- failed re-building ‘Ibex.Rmd’ SUMMARY: processing the following file failed: ‘Ibex.Rmd’ Error: Vignette re-building failed. Execution halted