############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 EWCE ### ############################################################################## ############################################################################## * checking for file ‘EWCE/DESCRIPTION’ ... OK * preparing ‘EWCE’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘EWCE.Rmd’ using rmarkdown Quitting from EWCE.Rmd:57-59 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! failed to load resource name: EH5376 title: ctd reason: C stack usage 7974260 is too close to the limit --- Backtrace: ▆ 1. └─ewceData::ctd() 2. ├─eh[["EH5376"]] 3. └─eh[["EH5376"]] 4. └─ExperimentHub (local) .local(x, i, j = j, ...) 5. ├─methods::callNextMethod(...) 6. │ └─base::eval(call, callEnv) 7. │ └─base::eval(call, callEnv) 8. └─AnnotationHub (local) .nextMethod(...) 9. └─AnnotationHub (local) .local(x, i, j = j, ...) 10. └─AnnotationHub:::.Hub_get1(...) 11. └─base::tryCatch(...) 12. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 13. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 14. └─value[[3L]](cond) 15. └─base::tryCatch(...) 16. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 17. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 18. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'EWCE.Rmd' failed with diagnostics: failed to load resource name: EH5376 title: ctd reason: C stack usage 7974260 is too close to the limit --- failed re-building ‘EWCE.Rmd’ --- re-building ‘extended.Rmd’ using rmarkdown Quitting from extended.Rmd:99-116 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `ctd[[1]]`: ! object of type 'closure' is not subsettable ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'extended.Rmd' failed with diagnostics: object of type 'closure' is not subsettable --- failed re-building ‘extended.Rmd’ SUMMARY: processing the following files failed: ‘EWCE.Rmd’ ‘extended.Rmd’ Error: Vignette re-building failed. Execution halted