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###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CSOA
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* checking for file ‘CSOA/DESCRIPTION’ ... OK
* preparing ‘CSOA’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘Advanced-CSOA.Rmd’ using rmarkdown

Quitting from Advanced-CSOA.Rmd:37-60 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h5_read_attribute()`:
! argument "bit64conversion" is missing, with no default
---
Backtrace:
     ▆
  1. └─scRNAseq::BaronPancreasData("human")
  2.   └─scRNAseq::fetchDataset(...)
  3.     └─alabaster.base::altReadObject(...)
  4.       └─scRNAseq (local) FUN(path, ...)
  5.         └─alabaster.base::readObject(...)
  6.           └─alabaster.sce (local) meth(path, metadata = metadata, ...)
  7.             └─alabaster.se::readRangedSummarizedExperiment(...)
  8.               └─alabaster.se::readSummarizedExperiment(...)
  9.                 └─alabaster.base::altReadObject(...)
 10.                   └─scRNAseq (local) FUN(path, ...)
 11.                     └─alabaster.base::readObject(...)
 12.                       └─alabaster.matrix (local) meth(path, metadata = metadata, ...)
 13.                         └─(function() {...
 14.                           └─alabaster.base::h5_read_attribute(ghandle, "type")
 15.                             └─rhdf5::H5Aread(ahandle, bit64conversion = bit64conversion)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Advanced-CSOA.Rmd' failed with diagnostics:
argument "bit64conversion" is missing, with no default
--- failed re-building ‘Advanced-CSOA.Rmd’

--- re-building ‘CSOA.Rmd’ using rmarkdown

Quitting from CSOA.Rmd:54-64 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h5_read_attribute()`:
! argument "bit64conversion" is missing, with no default
---
Backtrace:
     ▆
  1. └─scRNAseq::BaronPancreasData("human")
  2.   └─scRNAseq::fetchDataset(...)
  3.     └─alabaster.base::altReadObject(...)
  4.       └─scRNAseq (local) FUN(path, ...)
  5.         └─alabaster.base::readObject(...)
  6.           └─alabaster.sce (local) meth(path, metadata = metadata, ...)
  7.             └─alabaster.se::readRangedSummarizedExperiment(...)
  8.               └─alabaster.se::readSummarizedExperiment(...)
  9.                 └─alabaster.base::altReadObject(...)
 10.                   └─scRNAseq (local) FUN(path, ...)
 11.                     └─alabaster.base::readObject(...)
 12.                       └─alabaster.matrix (local) meth(path, metadata = metadata, ...)
 13.                         └─(function() {...
 14.                           └─alabaster.base::h5_read_attribute(ghandle, "type")
 15.                             └─rhdf5::H5Aread(ahandle, bit64conversion = bit64conversion)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'CSOA.Rmd' failed with diagnostics:
argument "bit64conversion" is missing, with no default
--- failed re-building ‘CSOA.Rmd’

--- re-building ‘The-CSOA-algorithm.Rmd’ using rmarkdown

Quitting from The-CSOA-algorithm.Rmd:33-52 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h5_read_attribute()`:
! argument "bit64conversion" is missing, with no default
---
Backtrace:
     ▆
  1. └─scRNAseq::BaronPancreasData("human")
  2.   └─scRNAseq::fetchDataset(...)
  3.     └─alabaster.base::altReadObject(...)
  4.       └─scRNAseq (local) FUN(path, ...)
  5.         └─alabaster.base::readObject(...)
  6.           └─alabaster.sce (local) meth(path, metadata = metadata, ...)
  7.             └─alabaster.se::readRangedSummarizedExperiment(...)
  8.               └─alabaster.se::readSummarizedExperiment(...)
  9.                 └─alabaster.base::altReadObject(...)
 10.                   └─scRNAseq (local) FUN(path, ...)
 11.                     └─alabaster.base::readObject(...)
 12.                       └─alabaster.matrix (local) meth(path, metadata = metadata, ...)
 13.                         └─(function() {...
 14.                           └─alabaster.base::h5_read_attribute(ghandle, "type")
 15.                             └─rhdf5::H5Aread(ahandle, bit64conversion = bit64conversion)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'The-CSOA-algorithm.Rmd' failed with diagnostics:
argument "bit64conversion" is missing, with no default
--- failed re-building ‘The-CSOA-algorithm.Rmd’

SUMMARY: processing the following files failed:
  ‘Advanced-CSOA.Rmd’ ‘CSOA.Rmd’ ‘The-CSOA-algorithm.Rmd’

Error: Vignette re-building failed.
Execution halted