############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Aerith ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’ * installing *source* package ‘Aerith’ ... ** this is package ‘Aerith’ version ‘0.99.11’ ** using staged installation ** libs using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ using C++17 using SDK: ‘MacOSX11.3.1.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c extractPSMfeatures.cpp -o extractPSMfeatures.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c filterPSMs.cpp -o filterPSMs.o filterPSMs.cpp:23:48: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return DataFrame::create(Named("psmIDs") = move(msipPSMinfo.psmIDs), ^ std:: filterPSMs.cpp:24:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _("ftFileNames") = move(msipPSMinfo.fileNames), ^ std:: filterPSMs.cpp:25:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["scanNumbers"] = move(msipPSMinfo.scanNumbers), ^ std:: filterPSMs.cpp:26:52: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["retentionTimes"] = move(msipPSMinfo.retentionTimes), ^ std:: filterPSMs.cpp:27:44: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["scores"] = move(msipPSMinfo.scores), ^ std:: filterPSMs.cpp:28:43: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["ranks"] = move(msipPSMinfo.ranks), ^ std:: filterPSMs.cpp:29:51: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["parentCharges"] = move(msipPSMinfo.parentCharges), ^ std:: filterPSMs.cpp:30:42: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["pcts"] = move(msipPSMinfo.pcts), ^ std:: filterPSMs.cpp:31:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["searchNames"] = move(msipPSMinfo.searchNames), ^ std:: filterPSMs.cpp:32:46: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["isDecoys"] = move(msipPSMinfo.isDecoys), ^ std:: filterPSMs.cpp:33:58: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["measuredParentMasses"] = move(msipPSMinfo.measuredParentMasses), ^ std:: filterPSMs.cpp:34:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["calculatedParentMasses"] = move(msipPSMinfo.calculatedParentMasses), ^ std:: filterPSMs.cpp:35:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["identifiedPepSeqs"] = move(msipPSMinfo.identifiedPeptides), ^ std:: filterPSMs.cpp:36:53: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["originalPepSeqs"] = move(msipPSMinfo.originalPeptides), ^ std:: filterPSMs.cpp:37:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["realPepSeqs"] = move(msipPSMinfo.realPepSeqs), ^ std:: filterPSMs.cpp:38:53: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["formatedPepSeqs"] = move(msipPSMinfo.formatedPepSeqs), ^ std:: filterPSMs.cpp:39:48: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["pepLengths"] = move(msipPSMinfo.pepLengths), ^ std:: filterPSMs.cpp:40:46: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["proNames"] = move(msipPSMinfo.proteinNames), ^ std:: filterPSMs.cpp:41:56: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["trimedProteinNames"] = move(msipPSMinfo.trimedProteinNames), ^ std:: filterPSMs.cpp:42:47: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["proCounts"] = move(msipPSMinfo.proCounts)); ^ std:: 20 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c filterPeptides.cpp -o filterPeptides.o filterPeptides.cpp:34:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] return DataFrame::create(Named("identifiedPeptides") = move(identifiedPeptides), ^ std:: filterPeptides.cpp:35:48: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["bestScores"] = move(bestScores), ^ std:: filterPeptides.cpp:36:45: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["isDecoy"] = move(isDecoy)); ^ std:: filterPeptides.cpp:85:62: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] DataFrame psmDf = DataFrame::create(Named("fileNames") = move(topPSMs.fileNames), ^ std:: filterPeptides.cpp:86:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["scanNumbers"] = move(topPSMs.scanNumbers), ^ std:: filterPeptides.cpp:87:62: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["parentCharges"] = move(topPSMs.parentCharges), ^ std:: filterPeptides.cpp:88:69: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["measuredParentMasses"] = move(topPSMs.measuredParentMasses), ^ std:: filterPeptides.cpp:89:71: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["calculatedParentMasses"] = move(topPSMs.calculatedParentMasses), ^ std:: filterPeptides.cpp:90:60: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["searchNames"] = move(topPSMs.searchNames), ^ std:: filterPeptides.cpp:91:55: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["scores"] = move(topPSMs.scores), ^ std:: filterPeptides.cpp:92:67: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["identifiedPeptides"] = move(topPSMs.identifiedPeptides), ^ std:: filterPeptides.cpp:93:65: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["originalPeptides"] = move(topPSMs.originalPeptides), ^ std:: filterPeptides.cpp:94:61: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["proteinNames"] = move(topPSMs.proteinNames)); ^ std:: 13 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c generateCFG.cpp -o generateCFG.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c getISOpeak.cpp -o getISOpeak.o getISOpeak.cpp:344:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] DataFrame::create(Named("Mass") = move(mSIP.vMass), _["Prob"] = move(mSIP.vProb)); ^ std:: getISOpeak.cpp:344:69: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] DataFrame::create(Named("Mass") = move(mSIP.vMass), _["Prob"] = move(mSIP.vProb)); ^ std:: getISOpeak.cpp:345:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] spectraList[i] = move(df); ^ std:: getISOpeak.cpp:400:37: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] DataFrame::create(Named("Mass") = move(masses), ^ std:: getISOpeak.cpp:401:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["Prob"] = move(probs), _["Kind"] = move(kinds)); ^ std:: getISOpeak.cpp:401:46: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["Prob"] = move(probs), _["Kind"] = move(kinds)); ^ std:: 6 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c readScan.cpp -o readScan.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c readScans.cpp -o readScans.o readScans.cpp:138:65: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] DataFrame peakDf = DataFrame::create(Named("mz") = wrap(move(mScan->mz)), ^ std:: readScans.cpp:139:68: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["intensity"] = wrap(move(mScan->intensity)), ^ std:: readScans.cpp:140:69: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["resolution"] = wrap(move(mScan->resolution)), ^ std:: readScans.cpp:141:67: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["baseLine"] = wrap(move(mScan->baseLine)), ^ std:: readScans.cpp:142:72: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["signalToNoise"] = wrap(move(mScan->signalToNoise)), ^ std:: readScans.cpp:143:65: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["charge"] = wrap(move(mScan->charge))); ^ std:: readScans.cpp:270:65: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] DataFrame peakDf = DataFrame::create(Named("mz") = wrap(move(mScan->mz)), ^ std:: readScans.cpp:271:68: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["intensity"] = wrap(move(mScan->intensity)), ^ std:: readScans.cpp:272:69: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["resolution"] = wrap(move(mScan->resolution)), ^ std:: readScans.cpp:273:67: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["baseLine"] = wrap(move(mScan->baseLine)), ^ std:: readScans.cpp:274:72: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["signalToNoise"] = wrap(move(mScan->signalToNoise)), ^ std:: readScans.cpp:275:65: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] _["charge"] = wrap(move(mScan->charge))); ^ std:: 12 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c readSips.cpp -o readSips.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c readSpe2Peps.cpp -o readSpe2Peps.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c scorePSM.cpp -o scorePSM.o scorePSM.cpp:431:22: warning: variable 'ibeginPos' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] ibeginPos, dPeptideMass, cIdentifyPrefix, ^~~~~~~~~ scorePSM.cpp:431:33: warning: variable 'dPeptideMass' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] ibeginPos, dPeptideMass, cIdentifyPrefix, ^~~~~~~~~~~~ scorePSM.cpp:431:47: warning: variable 'cIdentifyPrefix' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] ibeginPos, dPeptideMass, cIdentifyPrefix, ^~~~~~~~~~~~~~~ scorePSM.cpp:432:22: warning: variable 'cIdentifySuffix' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] cIdentifySuffix, cOriginalPrefix, cOriginalSuffix); ^~~~~~~~~~~~~~~ scorePSM.cpp:432:39: warning: variable 'cOriginalPrefix' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] cIdentifySuffix, cOriginalPrefix, cOriginalSuffix); ^~~~~~~~~~~~~~~ scorePSM.cpp:432:56: warning: variable 'cOriginalSuffix' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] cIdentifySuffix, cOriginalPrefix, cOriginalSuffix); ^~~~~~~~~~~~~~~ scorePSM.cpp:578:22: warning: variable 'ibeginPos' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] ibeginPos, dPeptideMass, cIdentifyPrefix, ^~~~~~~~~ scorePSM.cpp:578:33: warning: variable 'dPeptideMass' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] ibeginPos, dPeptideMass, cIdentifyPrefix, ^~~~~~~~~~~~ scorePSM.cpp:578:47: warning: variable 'cIdentifyPrefix' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] ibeginPos, dPeptideMass, cIdentifyPrefix, ^~~~~~~~~~~~~~~ scorePSM.cpp:579:22: warning: variable 'cIdentifySuffix' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] cIdentifySuffix, cOriginalPrefix, cOriginalSuffix); ^~~~~~~~~~~~~~~ scorePSM.cpp:579:39: warning: variable 'cOriginalPrefix' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] cIdentifySuffix, cOriginalPrefix, cOriginalSuffix); ^~~~~~~~~~~~~~~ scorePSM.cpp:579:56: warning: variable 'cOriginalSuffix' is uninitialized when passed as a const reference argument here [-Wuninitialized-const-reference] cIdentifySuffix, cOriginalPrefix, cOriginalSuffix); ^~~~~~~~~~~~~~~ 12 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c writeScans.cpp -o writeScans.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lib/PSMfeatureExtractor.cpp -o lib/PSMfeatureExtractor.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lib/PSMpeakAnnotator.cpp -o lib/PSMpeakAnnotator.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lib/PSMsFiltrator.cpp -o lib/PSMsFiltrator.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lib/Spe2PepFileReader.cpp -o lib/Spe2PepFileReader.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lib/averagine.cpp -o lib/averagine.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lib/cfgParser.cpp -o lib/cfgParser.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lib/ftFileReader.cpp -o lib/ftFileReader.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lib/ftFileWriter.cpp -o lib/ftFileWriter.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lib/isotopologue.cpp -o lib/isotopologue.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lib/ms2scan.cpp -o lib/ms2scan.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lib/peptide.cpp -o lib/peptide.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lib/peptidesFiltrator.cpp -o lib/peptidesFiltrator.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lib/proNovoConfig.cpp -o lib/proNovoConfig.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lib/sipFileReader.cpp -o lib/sipFileReader.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lib/sipGenerator.cpp -o lib/sipGenerator.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lib/sipPSM.cpp -o lib/sipPSM.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o Aerith.so RcppExports.o extractPSMfeatures.o filterPSMs.o filterPeptides.o generateCFG.o getISOpeak.o readScan.o readScans.o readSips.o readSpe2Peps.o scorePSM.o writeScans.o lib/PSMfeatureExtractor.o lib/PSMpeakAnnotator.o lib/PSMsFiltrator.o lib/Spe2PepFileReader.o lib/averagine.o lib/cfgParser.o lib/ftFileReader.o lib/ftFileWriter.o lib/isotopologue.o lib/ms2scan.o lib/peptide.o lib/peptidesFiltrator.o lib/proNovoConfig.o lib/sipFileReader.o lib/sipGenerator.o lib/sipPSM.o -F/Library/Frameworks/R.framework/.. -framework R installing to /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/00LOCK-Aerith/00new/Aerith/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Aerith)