############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ATACseqQC ### ############################################################################## ############################################################################## * checking for file ‘ATACseqQC/DESCRIPTION’ ... OK * preparing ‘ATACseqQC’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘ATACseqQC.Rmd’ using rmarkdown Quitting from ATACseqQC.Rmd:20-31 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `library()`: ! there is no package called 'phastCons100way.UCSC.hg19' --- Backtrace: ▆ 1. ├─base::suppressPackageStartupMessages(...) 2. │ └─base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage")) 3. └─base::library(phastCons100way.UCSC.hg19) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'ATACseqQC.Rmd' failed with diagnostics: there is no package called 'phastCons100way.UCSC.hg19' --- failed re-building ‘ATACseqQC.Rmd’ SUMMARY: processing the following file failed: ‘ATACseqQC.Rmd’ Error: Vignette re-building failed. Execution halted