############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data maEndToEnd ### ############################################################################## ############################################################################## * checking for file ‘maEndToEnd/DESCRIPTION’ ... OK * preparing ‘maEndToEnd’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘MA-Workflow.Rmd’ using rmarkdown trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2853_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/888_I.CEL' Content type 'unknown' length 11154163 bytes (10.6 MB) ================================================== trying URL 'https://www.ebi.ac.uk/biostudies/files/E-MTAB-2967/E-MTAB-2967.sdrf.txt' Content type 'text/plain; charset=UTF-8' length 22516 bytes (21 KB) ================================================== downloaded 21 KB Quitting from MA-Workflow.Rmd:367-372 [importCelfiles] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! These do not exist: /home/biocbuild/.cache/R/maEndToEnd/2853_I.CEL --- Backtrace: ▆ 1. └─oligo::read.celfiles(...) 2. └─oligo:::checkValidFilenames(filenames) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MA-Workflow.Rmd' failed with diagnostics: These do not exist: /home/biocbuild/.cache/R/maEndToEnd/2853_I.CEL --- failed re-building ‘MA-Workflow.Rmd’ SUMMARY: processing the following file failed: ‘MA-Workflow.Rmd’ Error: Vignette re-building failed. Execution halted