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###
### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data variancePartition
###
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* checking for file ‘variancePartition/DESCRIPTION’ ... OK
* preparing ‘variancePartition’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to process help pages)
Loading required namespace: variancePartition
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘FAQ.Rmd’ using rmarkdown
--- finished re-building ‘FAQ.Rmd’

--- re-building ‘additional_visualization.Rmd’ using rmarkdown
2025-11-12 17:27:20.549 R[28602:3736709] XType: Using static font registry.
--- finished re-building ‘additional_visualization.Rmd’

--- re-building ‘dream.Rmd’ using rmarkdown

Quitting from dream.Rmd:94-109 [preprocess]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'edgeR'
---
Backtrace:
    ▆
 1. └─base::library("edgeR")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'dream.Rmd' failed with diagnostics:
there is no package called 'edgeR'
--- failed re-building ‘dream.Rmd’

--- re-building ‘errors.Rmd’ using rmarkdown
--- finished re-building ‘errors.Rmd’

--- re-building ‘mvtests.Rmd’ using rmarkdown

Quitting from mvtests.Rmd:78-95 [dream]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'edgeR'
---
Backtrace:
    ▆
 1. └─base::library(edgeR)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'mvtests.Rmd' failed with diagnostics:
there is no package called 'edgeR'
--- failed re-building ‘mvtests.Rmd’

--- re-building ‘rnd_effects.Rmd’ using rmarkdown
--- finished re-building ‘rnd_effects.Rmd’

--- re-building ‘variancePartition.Rmd’ using rmarkdown

Quitting from variancePartition.Rmd:488-518 [limma]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'edgeR'
---
Backtrace:
    ▆
 1. └─base::library("edgeR")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'variancePartition.Rmd' failed with diagnostics:
there is no package called 'edgeR'
--- failed re-building ‘variancePartition.Rmd’

SUMMARY: processing the following files failed:
  ‘dream.Rmd’ ‘mvtests.Rmd’ ‘variancePartition.Rmd’

Error: Vignette re-building failed.
Execution halted