############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data subSeq ### ############################################################################## ############################################################################## * checking for file ‘subSeq/DESCRIPTION’ ... OK * preparing ‘subSeq’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘subSeq.Rnw’ using knitr Quitting from subSeq.Rnw:84-86 [subSeq_example] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `loadNamespace()`: ! there is no package called 'edgeR' --- Backtrace: x 1. +-subSeq::subsample(...) 2. | \-params %>% group_by(method, proportion, replication) %>% ... 3. +-dplyr::do(., perform.subsampling(.$method, .$proportion, .$replication)) 4. +-dplyr:::do.grouped_df(...) 5. | \-rlang::eval_tidy(args[[j]], mask) 6. +-subSeq (local) perform.subsampling(.$method, .$proportion, .$replication) 7. | \-subSeq (local) handler(subcounts, ...) 8. \-base::loadNamespace(x) 9. \-base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 10. \-base (local) withOneRestart(expr, restarts[[1L]]) 11. \-base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'subSeq.Rnw' failed with diagnostics: there is no package called 'edgeR' --- failed re-building ‘subSeq.Rnw’ SUMMARY: processing the following file failed: ‘subSeq.Rnw’ Error: Vignette re-building failed. Execution halted