############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data rfaRm ### ############################################################################## ############################################################################## * checking for file ‘rfaRm/DESCRIPTION’ ... OK * preparing ‘rfaRm’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘rfaRm.Rmd’ using rmarkdown Quitting from rfaRm.Rmd:73-83 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `content(response)$status`: ! $ operator is invalid for atomic vectors --- Backtrace: ▆ 1. └─rfaRm::rfamSequenceSearch("GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGUAUUUGCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC") 2. └─rfaRm:::rfamCheckSequenceSearchQuery2(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'rfaRm.Rmd' failed with diagnostics: $ operator is invalid for atomic vectors --- failed re-building ‘rfaRm.Rmd’ SUMMARY: processing the following file failed: ‘rfaRm.Rmd’ Error: Vignette re-building failed. Execution halted