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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mitch
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* checking for file ‘mitch/DESCRIPTION’ ... OK
* preparing ‘mitch’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘infiniumMethArrayWorkflow.Rmd’ using rmarkdown

Quitting from infiniumMethArrayWorkflow.Rmd:46-55 [lib]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'IlluminaHumanMethylation450kanno.ilmn12.hg19'
---
Backtrace:
    ▆
 1. ├─base::suppressPackageStartupMessages(...)
 2. │ └─base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
 3. └─base::library("IlluminaHumanMethylation450kanno.ilmn12.hg19")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'infiniumMethArrayWorkflow.Rmd' failed with diagnostics:
there is no package called 'IlluminaHumanMethylation450kanno.ilmn12.hg19'
--- failed re-building ‘infiniumMethArrayWorkflow.Rmd’

--- re-building ‘mitchWorkflow.Rmd’ using rmarkdown
trying URL 'https://reactome.org/download/current/ReactomePathways.gmt.zip'
Content type 'application/zip' length 286744 bytes (280 KB)
==================================================
downloaded 280 KB

2025-11-12 16:43:55.984 R[17404:2640911] XType: Using static font registry.
--- finished re-building ‘mitchWorkflow.Rmd’

SUMMARY: processing the following file failed:
  ‘infiniumMethArrayWorkflow.Rmd’

Error: Vignette re-building failed.
Execution halted