############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data epigraHMM ### ############################################################################## ############################################################################## * checking for file ‘epigraHMM/DESCRIPTION’ ... OK * preparing ‘epigraHMM’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘epigraHMM.Rmd’ using rmarkdown Quitting from epigraHMM.Rmd:53-89 [introduction_workflow] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `checkInputBam()`: ! bamFiles is not a proper argument, check the help manual. --- Backtrace: ▆ 1. └─epigraHMM::epigraHMMDataSetFromBam(...) 2. └─epigraHMM:::checkInputBam(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'epigraHMM.Rmd' failed with diagnostics: bamFiles is not a proper argument, check the help manual. --- failed re-building ‘epigraHMM.Rmd’ SUMMARY: processing the following file failed: ‘epigraHMM.Rmd’ Error: Vignette re-building failed. Execution halted