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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data blase
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* checking for file ‘blase/DESCRIPTION’ ... OK
* preparing ‘blase’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘BLASE-for-annotating-scRNA-seq.Rmd’ using rmarkdown
2025-11-13 15:50:16.022 R[30536:13274169] XType: Using static font registry.

Quitting from BLASE-for-annotating-scRNA-seq.Rmd:102-118 [calculate_gene_peakedness]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `reducer$value.cache[[as.character(idx)]] <- values`:
! wrong args for environment subassignment
---
Backtrace:
     ▆
  1. └─blase::calculate_gene_peakedness(...)
  2.   ├─BiocParallel::bplapply(...)
  3.   └─BiocParallel::bplapply(...)
  4.     └─BiocParallel:::.bpinit(...)
  5.       ├─BiocParallel::bploop(...)
  6.       └─BiocParallel:::bploop.lapply(...)
  7.         └─BiocParallel:::.bploop_impl(...)
  8.           └─BiocParallel:::.collect_result(manager, reducer, progress, BPPARAM)
  9.             ├─BiocParallel:::.reducer_add(reducer, njob, value)
 10.             └─BiocParallel:::.reducer_add(reducer, njob, value)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'BLASE-for-annotating-scRNA-seq.Rmd' failed with diagnostics:
wrong args for environment subassignment
--- failed re-building ‘BLASE-for-annotating-scRNA-seq.Rmd’

--- re-building ‘BLASE-for-excluding-developmental-genes-from-bulk-RNA-seq.Rmd’ using rmarkdown
Warning in dir.create(biocDir) :
  cannot create dir '/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//Rtmprkzamz/BiocStyle', reason 'No such file or directory'
Warning in file(con, "w") :
  cannot open file '/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//Rtmprkzamz/BiocStyle/template.html': No such file or directory
Error: processing vignette 'BLASE-for-excluding-developmental-genes-from-bulk-RNA-seq.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘BLASE-for-excluding-developmental-genes-from-bulk-RNA-seq.Rmd’

--- re-building ‘assign-bulk-to-pseudotime.Rmd’ using rmarkdown
Warning in dir.create(biocDir) :
  cannot create dir '/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//Rtmprkzamz/BiocStyle', reason 'No such file or directory'
Warning in file(con, "w") :
  cannot open file '/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//Rtmprkzamz/BiocStyle/template.html': No such file or directory
Error: processing vignette 'assign-bulk-to-pseudotime.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘assign-bulk-to-pseudotime.Rmd’

SUMMARY: processing the following files failed:
  ‘BLASE-for-annotating-scRNA-seq.Rmd’
  ‘BLASE-for-excluding-developmental-genes-from-bulk-RNA-seq.Rmd’
  ‘assign-bulk-to-pseudotime.Rmd’

Error: Vignette re-building failed.
Execution halted