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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SuperCellCyto
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* checking for file ‘SuperCellCyto/DESCRIPTION’ ... OK
* preparing ‘SuperCellCyto’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘SuperCellCyto.Rmd’ using rmarkdown

Quitting from SuperCellCyto.Rmd:283-292 [run_supercellcyto_parallel]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `reducer$value.cache[[as.character(idx)]] <- values`:
! wrong args for environment subassignment
---
Backtrace:
     ▆
  1. └─SuperCellCyto::runSuperCellCyto(...)
  2.   └─SuperCellCyto:::.run_supercells_bplapply(...)
  3.     ├─BiocParallel::bplapply(...)
  4.     └─BiocParallel::bplapply(...)
  5.       └─BiocParallel:::.bpinit(...)
  6.         ├─BiocParallel::bploop(...)
  7.         └─BiocParallel:::bploop.lapply(...)
  8.           └─BiocParallel:::.bploop_impl(...)
  9.             └─BiocParallel:::.collect_result(manager, reducer, progress, BPPARAM)
 10.               ├─BiocParallel:::.reducer_add(reducer, njob, value)
 11.               └─BiocParallel:::.reducer_add(reducer, njob, value)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'SuperCellCyto.Rmd' failed with diagnostics:
wrong args for environment subassignment
--- failed re-building ‘SuperCellCyto.Rmd’

--- re-building ‘how_to_prepare_data.Rmd’ using rmarkdown
Warning in dir.create(biocDir) :
  cannot create dir '/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpnquTvH/BiocStyle', reason 'No such file or directory'
Warning in file(con, "w") :
  cannot open file '/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpnquTvH/BiocStyle/template.html': No such file or directory
Error: processing vignette 'how_to_prepare_data.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘how_to_prepare_data.Rmd’

--- re-building ‘interoperability_with_sce.Rmd’ using rmarkdown
Warning in dir.create(biocDir) :
  cannot create dir '/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpnquTvH/BiocStyle', reason 'No such file or directory'
Warning in file(con, "w") :
  cannot open file '/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpnquTvH/BiocStyle/template.html': No such file or directory
Error: processing vignette 'interoperability_with_sce.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘interoperability_with_sce.Rmd’

--- re-building ‘interoperability_with_seurat.Rmd’ using rmarkdown
Warning in dir.create(biocDir) :
  cannot create dir '/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpnquTvH/BiocStyle', reason 'No such file or directory'
Warning in file(con, "w") :
  cannot open file '/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpnquTvH/BiocStyle/template.html': No such file or directory
Error: processing vignette 'interoperability_with_seurat.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘interoperability_with_seurat.Rmd’

--- re-building ‘using_supercellcyto_for_stratified_summarising.Rmd’ using rmarkdown
Warning in dir.create(biocDir) :
  cannot create dir '/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpnquTvH/BiocStyle', reason 'No such file or directory'
Warning in file(con, "w") :
  cannot open file '/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T//RtmpnquTvH/BiocStyle/template.html': No such file or directory
Error: processing vignette 'using_supercellcyto_for_stratified_summarising.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘using_supercellcyto_for_stratified_summarising.Rmd’

SUMMARY: processing the following files failed:
  ‘SuperCellCyto.Rmd’ ‘how_to_prepare_data.Rmd’
  ‘interoperability_with_sce.Rmd’ ‘interoperability_with_seurat.Rmd’
  ‘using_supercellcyto_for_stratified_summarising.Rmd’

Error: Vignette re-building failed.
Execution halted