############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MsExperiment ### ############################################################################## ############################################################################## * checking for file ‘MsExperiment/DESCRIPTION’ ... OK * preparing ‘MsExperiment’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘MsExperiment.Rmd’ using rmarkdown Quitting from MsExperiment.Rmd:79-84 [px] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `open.connection()`: ! cannot open the connection --- Backtrace: ▆ 1. └─rpx::PXDataset("PXD022816") 2. └─rpx:::list_files(ftp_url) 3. └─curl::curl(url = ftp_url, "r", handle = list_files) 4. └─curl:::curl_connection(url, open, handle) 5. ├─base::withCallingHandlers(...) 6. ├─base::open(con, open = mode) 7. └─base::open.connection(con, open = mode) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MsExperiment.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘MsExperiment.Rmd’ SUMMARY: processing the following file failed: ‘MsExperiment.Rmd’ Error: Vignette re-building failed. Execution halted