############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MsDataHub ### ############################################################################## ############################################################################## * checking for file ‘MsDataHub/DESCRIPTION’ ... OK * preparing ‘MsDataHub’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘MsDataHub.Rmd’ using rmarkdown Quitting from MsDataHub.Rmd:64-68 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `h()`: ! error in evaluating the argument 'object' in selecting a method for function 'backendInitialize': The use of 'MsBackendMzR' requires package 'mzR'. Please install with 'BiocInstaller::install("mzR")' --- Backtrace: ▆ 1. ├─Spectra::Spectra(f) 2. ├─Spectra::Spectra(f) 3. │ └─Spectra (local) .local(object, ...) 4. │ ├─Spectra:::.create_spectra(...) 5. │ │ └─ProtGenerics::backendInitialize(...) 6. │ └─Spectra::MsBackendMzR() 7. │ └─base::stop(...) 8. └─base::.handleSimpleError(...) 9. └─base (local) h(simpleError(msg, call)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MsDataHub.Rmd' failed with diagnostics: error in evaluating the argument 'object' in selecting a method for function 'backendInitialize': The use of 'MsBackendMzR' requires package 'mzR'. Please install with 'BiocInstaller::install("mzR")' --- failed re-building ‘MsDataHub.Rmd’ SUMMARY: processing the following file failed: ‘MsDataHub.Rmd’ Error: Vignette re-building failed. Execution halted