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###
### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GBScleanR
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* checking for file ‘GBScleanR/DESCRIPTION’ ... OK
* preparing ‘GBScleanR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘BasicUsageOfGBScleanR.rmd’ using rmarkdown

Quitting from BasicUsageOfGBScleanR.rmd:821-823 [unnamed-chunk-96]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `seqOptimize()`:
! unused argument (gdsfn = object$filename)
---
Backtrace:
    ▆
 1. ├─GBScleanR::estGeno(gds, node = "filt", iter = 4)
 2. └─GBScleanR::estGeno(gds, node = "filt", iter = 4)
 3.   └─GBScleanR (local) .local(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'BasicUsageOfGBScleanR.rmd' failed with diagnostics:
unused argument (gdsfn = object$filename)
--- failed re-building ‘BasicUsageOfGBScleanR.rmd’

SUMMARY: processing the following file failed:
  ‘BasicUsageOfGBScleanR.rmd’

Error: Vignette re-building failed.
Execution halted