############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnVILWorkflow ### ############################################################################## ############################################################################## * checking for file ‘AnVILWorkflow/DESCRIPTION’ ... OK * preparing ‘AnVILWorkflow’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘salmon.Rmd’ using rmarkdown Quitting from salmon.Rmd:16-21 [setup] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! 'gcloud_exists' is not an exported object from 'namespace:AnVILGCP' --- Backtrace: ▆ 1. └─knitr::opts_chunk$set(...) 2. ├─knitr (local) set2(resolve(...)) 3. │ └─knitr (local) get(names(values), drop = FALSE) 4. │ └─stats::setNames(defaults[name], name) 5. └─knitr (local) resolve(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'salmon.Rmd' failed with diagnostics: 'gcloud_exists' is not an exported object from 'namespace:AnVILGCP' --- failed re-building ‘salmon.Rmd’ SUMMARY: processing the following file failed: ‘salmon.Rmd’ Error: Vignette re-building failed. Execution halted